Docker error

[lcottret]

Hi,

I have a docker error :

WARNING: Some services (validator) use the 'configs' key, which will be ignored. Compose does not support 'configs' configuration - use `docker stack deploy` to deploy to a swarm.
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/docker/api/client.py", line 214, in _retrieve_server_version
    return self.version(api_version=False)["ApiVersion"]
  File "/usr/lib/python3/dist-packages/docker/api/daemon.py", line 181, in version
    return self._result(self._get(url), json=True)
  File "/usr/lib/python3/dist-packages/docker/utils/decorators.py", line 46, in inner
    return f(self, *args, **kwargs)
  File "/usr/lib/python3/dist-packages/docker/api/client.py", line 237, in _get
    return self.get(url, **self._set_request_timeout(kwargs))
  File "/usr/local/lib/python3.10/dist-packages/requests/sessions.py", line 602, in get
    return self.request("GET", url, **kwargs)
  File "/usr/local/lib/python3.10/dist-packages/requests/sessions.py", line 589, in request
    resp = self.send(prep, **send_kwargs)
  File "/usr/local/lib/python3.10/dist-packages/requests/sessions.py", line 703, in send
    r = adapter.send(request, **kwargs)
  File "/usr/local/lib/python3.10/dist-packages/requests/adapters.py", line 486, in send
    resp = conn.urlopen(
  File "/usr/local/lib/python3.10/dist-packages/urllib3/connectionpool.py", line 790, in urlopen
    response = self._make_request(
  File "/usr/local/lib/python3.10/dist-packages/urllib3/connectionpool.py", line 496, in _make_request
    conn.request(
TypeError: HTTPConnection.request() got an unexpected keyword argument 'chunked'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/bin/docker-compose", line 33, in <module>
    sys.exit(load_entry_point('docker-compose==1.29.2', 'console_scripts', 'docker-compose')())
  File "/usr/lib/python3/dist-packages/compose/cli/main.py", line 81, in main
    command_func()
  File "/usr/lib/python3/dist-packages/compose/cli/main.py", line 200, in perform_command
    project = project_from_options('.', options)
  File "/usr/lib/python3/dist-packages/compose/cli/command.py", line 60, in project_from_options
    return get_project(
  File "/usr/lib/python3/dist-packages/compose/cli/command.py", line 152, in get_project
    client = get_client(
  File "/usr/lib/python3/dist-packages/compose/cli/docker_client.py", line 41, in get_client
    client = docker_client(
  File "/usr/lib/python3/dist-packages/compose/cli/docker_client.py", line 170, in docker_client
    client = APIClient(use_ssh_client=not use_paramiko_ssh, **kwargs)
  File "/usr/lib/python3/dist-packages/docker/api/client.py", line 197, in __init__
    self._version = self._retrieve_server_version()
  File "/usr/lib/python3/dist-packages/docker/api/client.py", line 221, in _retrieve_server_version
    raise DockerException(
docker.errors.DockerException: Error while fetching server API version: HTTPConnection.request() got an unexpected keyword argument 'chunked'

Here is my command line :

sudo docker-compose run \
	-v /my/long/path/targetNetworks:/models/ \
	-v /my/long/path/config.json:/config.json \
	-v /my/long/path:/output \
	polisher \
	--input=/models/APOM_WJL.xml \
	--output=/output/APOM_WJL_polished.xml \
	--config-file /config.json

Docker version 28.1.1 Ubuntu 22.04.5 LTS

I tried the API but unfortunately, I also got an error : https://github.com/draeger-lab/MPClient/issues/1