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Published 20 hours ago • verified publisher icon deeptools

Can I draw a whole-genome chromatin metaplot with Deeptools?

Open TheAbsy opened this issue 3 years ago • 1 comments

Hello! I want to know the method of drawing metaplot like this,the width of each box correlates with the chromosome length. C@@6W%DOO @)A(UH`S1~$WN Thank you

TheAbsy avatar Feb 08 '22 13:02 TheAbsy

You could in theory do that, by making a BED file with 1 entry for each chromosome. However the boxes won't be scaled to the length of the chromosome, since that makes direct comparison more difficult (you could leave X kb on each end unscaled, though, depending on what you want to show).

dpryan79 avatar Feb 09 '22 10:02 dpryan79