datajoint-python

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Name external store files with primary key when downloaded

1

## Feature Request ### Problem In many pipelines, external store files may have identical names. For example, an experimenter may name all their raw electrophysiology data 'data.bin'. When fetching this...

ghost

Cell array of arrays of doubles cannot be fetched in python, only in matlab

8

## Bug Report ### Description Fetching fails in python when each entry for a given attribute (defined in matlab) is a cell array, and each element of the cell array...

renanmcosta

`.parts` not always returning parts

2

## Bug Report ### Description Sometimes the `.parts` property on tables returns an empty list even if the table has parts. ```python @schema class MyTable(dj.Manual): definition = """ a: int...

christoph-blessing

dj.diagram not working after update to 14.1

4

Hi all, has there been a change to dj.Diagram? I updated to dj 14.1 and now I am receiving this error: `--------------------------------------------------------------------------- ValueError Traceback (most recent call last) File ~/miniconda3/envs/datajoint/lib/python3.8/site-packages/IPython/core/formatters.py:343,...

troselab-setup

Error during distributed computing populaution

3

Hello, I am experiencing an issue with the distributed computation option in Datajoint. Especially I am trying to run the command lsensGF.ComputeFISSA.populate(reserve_jobs =True) after I have cleaned the the lsensGF.schema.jobs()...

foustgeorge

dj.ERD(schema) runs into TypeError

3

## Bug Report ```python schema = dj.schema('MY_DATABASE') dj.ERD(schema) ``` runs into ``` File ~\miniconda3\envs\detectron\lib\site-packages\datajoint\diagram.py:428, in Diagram.make_svg(self) 425 def make_svg(self): 426 from IPython.display import SVG --> 428 return SVG(self.make_dot().create_svg()) File ~\miniconda3\envs\detectron\lib\site-packages\datajoint\diagram.py:306,...

horsto

dj.Top restriction

2

A-Baji

Examples: ``` vscode ➜ /workspaces/datajoint-python (dj-cli) $ dj dj repl >>> dj.config { 'connection.charset': '', 'connection.init_function': None, 'database.host': 'fakeservices.datajoint.io', 'database.password': 'simple', 'database.port': 3306, 'database.reconnect': True, 'database.use_tls': None, 'database.user': 'root', 'display.limit':...

A-Baji

Issuing a in-progress PR on the pytest conversion of the test suite. I dug this up from an old backup. Unfortunately, the original source was corrupted so I used `decompyle3`...

guzman-raphael

S3 external files OS Error

1

I am trying to retrieve external blobs saved in a Linode (Akamai) bucket (S3). This works fine most of the time, but larger blobs seem to run into errors during...

horsto