Who uses Cytoscape.js?

[maxkfranz]

trafficstars

It would be nice to include a list of organisations that use Cytoscape.js in the docs.

Please include:

• Organisation name
• Link to organisation site

[danieljue]

DARPA XDATA / Sotera Defense Solutions, Inc. http://sotera.github.io/graphene/ http://www.darpa.mil/opencatalog/xdata.html

[maxkfranz]

Pathway Commons http://www.pathwaycommons.org

[maxkfranz]

NDEx http://home.ndexbio.org/

[maxkfranz]

Later:

GeneMANIA http://genemania.org

[keiono]

Also, we are using it:

CyNetShare

http://cynetshare.ucsd.edu/

[ktei]

InfoTrack http://www.infotrack.com.au/

[starkfree]

BioGRID http://thebiogrid.org/ Example: http://thebiogrid.org/33257/network/saccharomyces-cerevisiae/msb2.html

[ghost]

dSysMap http://dsysmap.irbbarcelona.org

[EDreven]

video instruction. http://www.kartoteka.ru/vizual The module itself is not free.

[keiono]

It's still in beta, but our embedded Jupyter (IPython) Notebook widget uses cytoscape.js:

https://github.com/idekerlab/py2cytoscape

[maxkfranz]

Intermine : University of Cambridge : http://intermine.org/

https://twitter.com/intermineorg/status/664410088623489024

[maxkfranz]

ARAS PLM : http://www.aras.com/

https://twitter.com/yoannmaingon/status/658042200165588992

[maxruby]

Visual Interaction GmbH: http://www.mygaze.com

[patbuergin-zz]

GIGRAPH – Network Visualization for Excel https://gigraph.io (non-commercial, private project)

[mabossert]

I use at Cray inc. as part of a front-end analytics application run on our supercomputers. http://www.cray.com

[danmaclean]

PINet - http://pinet.tsl.ac.uk Tool for The Sainsbury Laboratory network analyses

[YMA-MDL]

Ganister - http://www.ganister.eu/ Configuration management solution for Electronic/HighTech/Defense&Security companies

[maxkfranz]

Elsevier https://www.elsevier.com/books-and-journals/content-innovation/interactive-network-viewer

[AoDev]

Trace: https://trace.risingstack.com/

Microservices Visualized Anomaly detection, distributed transaction tracking and process monitoring for your services.

[michalhabala]

Graphlytic - Graph BI platform http://graphlytic.sk/

[jfreyreg]

Abasy Atlas: A comprehensive atlas of systems, global network properties, and system-level elements shaping regulatory networks across bacteria http://abasy.ccg.unam.mx

[diegoalonso78]

APID - Agile Protein Interactomes DataServer http://apid.dep.usal.es Example: http://cicblade.dep.usal.es:8080/APID/InteractionsNetworkApp.action?protein=P26951

[narseo]

ICSI Haystack Project to show tracking activity on mobile apps:

https://haystack.mobi/panopticon/

[Malalama]

A friend and I have been working on Musicalized, a Family Tree of All Music Genres:

http://en.musicalized.com/full

Happy to receive some feedback!

[tmmurali]

GraphSpace, a web-based system for storing, sharing, and visualizing graphs in order to foster collaborative research.

Site: www.graphspace.org Code: https://github.com/Murali-group/GraphSpace

[diegoalonso78]

Thank you for adding APID.

I noticed that the link isn't working. Could you please link it to http://apid.dep.usal.es ?

Thanks in advance.

[BrettJSettle]

BS CytoGraph, a graph visualization and JS algorithm testing environment and sharing site. Site: http://www.thesettleproject.com/graph

[xmas]

We're using Cytoscape at rezza.io. Working great for interactive relational database modeling!

[dfcarpenter]

We are using cytoscape all over the place. Great work. Stringify stringify.com

[Tadasu85]

Using cytoscape to develop SteemStars which is a game along side steemit.com