Codebase as context only picked up one source files

[dandv]

Before submitting your bug report

• [X] I believe this is a bug. I'll try to join the Continue Discord for questions
• [X] I'm not able to find an open issue that reports the same bug
• [ ] I've seen the troubleshooting guide on the Continue Docs - partially, see #3557

Relevant environment info

- OS: Linux
- Continue version: 0.0.83
- IDE version: WebStorm 2024.2.4 Build #WS-242.23726.96, built on October 22, 2024
- Model: gemini-2.0-flash-thinking-exp-1219

Description

I'm working on a client-server application, with the client written in Google Apps Script (/apps-script/*.gs files) and the server cloud function written in TypeScript (one function with two endpoints in functions/src/*.ts).

I submitted a prompt "with the codebase as context", but Continue didn't index any of the server cloud functions code, one of which being critical - the implementation of the server endpoint called by the client. Instead it submitted various chunks from an implementation notes file. It did correctly identify the client code lines (in Claude.gs).

When I submitted with codebase in Cursor, it did send relevant chunks from the /functions/src/claude-proxy.ts file that implements the relevant endpoint.

To reproduce

Log output

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