codegen validation rejects valid document

[mr-c]

https://github.com/ResearchObject/runcrate/blob/main/tests/data/revsort-run-1/workflow/packed.cwl

https://github.com/ResearchObject/runcrate/actions/runs/6746561680/job/18340868647#step:5:226

E       schema_salad.exceptions.ValidationException: Value is a array, but valid type for this field is an object.
E       Value is a array, but valid type for this field is an object.
E       Value is a array, but valid type for this field is an object.

~~Also, where are the line numbers and filename?~~

[mr-c]

also these 4 conformance tests fail to run using cwltool --fast-parser and the new codegen

• format_checking_equivalentclass: https://github.com/common-workflow-language/cwl-v1.2/blob/1.2.1_proposed/tests/formattest3.cwl
• filesarray_secondaryfiles: https://github.com/common-workflow-language/cwl-v1.2/blob/1.2.1_proposed/tests/docker-array-secondaryfiles.cwl
• input_records_file_entry_with_format: https://github.com/common-workflow-language/cwl-v1.2/blob/1.2.1_proposed/tests/record-in-format.cwl
• record_output_file_entry_format: https://github.com/common-workflow-language/cwl-v1.2/blob/1.2.1_proposed/tests/record-out-format.cwl

https://github.com/common-workflow-language/cwltool/actions/runs/6849823212/job/18622793216?pr=1678#step:7:335