napari_pyclesperanto_assistant
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Published
20 hours ago •
clEsperanto
clEsperanto
Connected component labeling returns error on macOS M1
trafficstars
Noticed this by accident with #48
The first Operation in the Label widget Connected component labeling results in long beachball and error on macOS 12.1, napari 0.14.0 and N-pycl-A 0.15.1 . The other Operations (including other two Connected component ones) work fine—with the exception of the duplicate voronoi-otsu noted in #48
Here's the error:
2022-02-13 11:18:14.286 | ERROR | napari_pyclesperanto_assistant._gui._category_widget:gui_function:324 - An error has been caught in function 'gui_function', process 'MainProcess' (27274), thread 'MainThread' (4342056320):
Traceback (most recent call last):
File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/bin/napari", line 10, in <module>
sys.exit(main())
│ │ └ <function main at 0x12442c790>
│ └ <built-in function exit>
└ <module 'sys' (built-in)>
File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/napari/__main__.py", line 449, in main
_run()
└ <function _run at 0x12442c5e0>
File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/napari/__main__.py", line 338, in _run
run(gui_exceptions=True)
└ <function run at 0x12480ca60>
File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/napari/_qt/qt_event_loop.py", line 402, in run
app.exec_()
│ └ <built-in method exec_>
└ <PyQt5.QtWidgets.QApplication object at 0x124fbddc0>
File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/magicgui/backends/_qtpy/widgets.py", line 646, in _emit_data
self._event_filter.valueChanged.emit(self._qwidget.itemData(index))
│ │ │ │ │ │ └ 0
│ │ │ │ │ └ <built-in method itemData>
│ │ │ │ └ <PyQt5.QtWidgets.QComboBox object at 0x13169a8b0>
│ │ │ └ <magicgui.backends._qtpy.widgets.ComboBox object at 0x1316eff10>
│ │ └ <unbound PYQT_SIGNAL valueChanged(PyQt_PyObject)>
│ └ <magicgui.backends._qtpy.widgets.EventFilter object at 0x13169af70>
└ <magicgui.backends._qtpy.widgets.ComboBox object at 0x1316eff10>
File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/magicgui/widgets/_bases/value_widget.py", line 57, in _on_value_change
self.changed.emit(value)
│ │ │ └ 'Connected component labeling (clesperanto)'
│ │ └ <cyfunction SignalInstance.emit at 0x103049790>
│ └ <SignalInstance 'changed' on ComboBox(value='Connected component labeling (clesperanto)', annotation=<class 'str'>, name='op_...
└ ComboBox(value='Connected component labeling (clesperanto)', annotation=<class 'str'>, name='op_name')
File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/magicgui/events.py", line 85, in _run_emit_loop
cb(*args[:max_args])
│ │ └ 0
│ └ ('Connected component labeling (clesperanto)',)
└ <function ContainerWidget.insert.<locals>.<lambda> at 0x1317a4dc0>
File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/magicgui/widgets/_bases/container_widget.py", line 165, in <lambda>
widget.changed.connect(lambda: self.changed.emit(self))
│ │ │ └ <FunctionGui do_label(*, input0: napari.layers.base.base.Layer = <Image layer 'Image:0' at 0x14f5089d0>, op_name: str = 'Conn...
│ │ └ <cyfunction SignalInstance.emit at 0x103049790>
│ └ <SignalInstance 'changed' on <FunctionGui do_label(*, input0: napari.layers.base.base.Layer = <Image layer 'Image:0' at 0x14f...
└ <FunctionGui do_label(*, input0: napari.layers.base.base.Layer = <Image layer 'Image:0' at 0x14f5089d0>, op_name: str = 'Conn...
File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/magicgui/events.py", line 85, in _run_emit_loop
cb(*args[:max_args])
│ │ └ 0
│ └ (<FunctionGui do_label(*, input0: napari.layers.base.base.Layer = <Image layer 'Image:0' at 0x14f5089d0>, op_name: str = 'Con...
└ <bound method FunctionGui._on_change of <FunctionGui do_label(*, input0: napari.layers.base.base.Layer = <Image layer 'Image:...
File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/magicgui/widgets/_function_gui.py", line 221, in _on_change
self()
└ <FunctionGui do_label(*, input0: napari.layers.base.base.Layer = <Image layer 'Image:0' at 0x14f5089d0>, op_name: str = 'Conn...
File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/magicgui/widgets/_function_gui.py", line 303, in __call__
value = self._function(*bound.args, **bound.kwargs)
│ │ │ │ │ └ <property object at 0x10301e130>
│ │ │ │ └ <BoundArguments (input0=<Image layer 'Image:0' at 0x14f5089d0>, op_name='Connected component labeling (clesperanto)', x=2.0, ...
│ │ │ └ <property object at 0x10301e0e0>
│ │ └ <BoundArguments (input0=<Image layer 'Image:0' at 0x14f5089d0>, op_name='Connected component labeling (clesperanto)', x=2.0, ...
│ └ <function make_gui_for_category.<locals>.gui_function at 0x16c81c1f0>
└ <FunctionGui do_label(*, input0: napari.layers.base.base.Layer = <Image layer 'Image:0' at 0x14f5089d0>, op_name: str = 'Conn...
> File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/napari_pyclesperanto_assistant/_gui/_category_widget.py", line 324, in gui_function
result, used_args = call_op(op_name, inputs, t_position, viewer, **kwargs)
│ │ │ │ │ └ {'x': 2.0, 'y': 2.0, 'z': 0.0, 'u': 0.0, 'v': 0.0, 'w': 0.0, 'a': False, 'b': False, 'c': False, 'k': '', 'l': '', 'm': ''}
│ │ │ │ └ Viewer(axes=Axes(visible=False, labels=True, colored=True, dashed=False, arrows=True), camera=Camera(center=(0.0, 126.5, 127....
│ │ │ └ None
│ │ └ [<Image layer 'Image:0' at 0x14f5089d0>]
│ └ 'Connected component labeling (clesperanto)'
└ <function call_op at 0x14df454c0>
File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/napari_pyclesperanto_assistant/_gui/_category_widget.py", line 154, in call_op
gpu_out = gpu_out.astype(int)
│ └ <function OCLArray.astype at 0x14d91e700>
└ cl.Array([[1, 1, 1, ..., 1, 1, 1],
[1, 1, 1, ..., 1, 1, 1],
[1, 1, 1, ..., 1, 1, 1],
...,
[1, 1, ...
File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier0/_pycl.py", line 148, in astype
return copy(self, copied)
│ │ └ cl.Array([[0, 0, 0, ..., 0, 0, 0],
│ │ [0, 0, 0, ..., 0, 0, 0],
│ │ [0, 0, 0, ..., 0, 0, 0],
│ │ ...,
│ │ [0, 0, ...
│ └ cl.Array([[1, 1, 1, ..., 1, 1, 1],
│ [1, 1, 1, ..., 1, 1, 1],
│ [1, 1, 1, ..., 1, 1, 1],
│ ...,
│ [1, 1, ...
└ <function copy at 0x14d93c280>
File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier0/_plugin_function.py", line 71, in worker_function
return function(*bound.args, **bound.kwargs)
│ │ │ │ └ <property object at 0x10301e130>
│ │ │ └ <BoundArguments (source=cl.Array([[1, 1, 1, ..., 1, 1, 1],
│ │ │ [1, 1, 1, ..., 1, 1, 1],
│ │ │ [1, 1, 1, ..., 1, 1, 1],
│ │ │ ...
│ │ └ <property object at 0x10301e0e0>
│ └ <BoundArguments (source=cl.Array([[1, 1, 1, ..., 1, 1, 1],
│ [1, 1, 1, ..., 1, 1, 1],
│ [1, 1, 1, ..., 1, 1, 1],
│ ...
└ <function copy at 0x14d93c1f0>
File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier1/_copy.py", line 36, in copy
execute(__file__, '../clij-opencl-kernels/kernels/copy_' + str(len(destination.shape)) + 'd_x.cl', 'copy_' + str(len(destination.shape)) + 'd', destination.shape, parameters)
│ │ │ │ │ │ │ │ └ {'dst': cl.Array([[0, 0, 0, ..., 0, 0, 0],
│ │ │ │ │ │ │ │ [0, 0, 0, ..., 0, 0, 0],
│ │ │ │ │ │ │ │ [0, 0, 0, ..., 0, 0, 0],
│ │ │ │ │ │ │ │ ...,
│ │ │ │ │ │ │ │ ...
│ │ │ │ │ │ │ └ (254, 256)
│ │ │ │ │ │ └ cl.Array([[0, 0, 0, ..., 0, 0, 0],
│ │ │ │ │ │ [0, 0, 0, ..., 0, 0, 0],
│ │ │ │ │ │ [0, 0, 0, ..., 0, 0, 0],
│ │ │ │ │ │ ...,
│ │ │ │ │ │ [0, 0, ...
│ │ │ │ │ └ (254, 256)
│ │ │ │ └ cl.Array([[0, 0, 0, ..., 0, 0, 0],
│ │ │ │ [0, 0, 0, ..., 0, 0, 0],
│ │ │ │ [0, 0, 0, ..., 0, 0, 0],
│ │ │ │ ...,
│ │ │ │ [0, 0, ...
│ │ │ └ (254, 256)
│ │ └ cl.Array([[0, 0, 0, ..., 0, 0, 0],
│ │ [0, 0, 0, ..., 0, 0, 0],
│ │ [0, 0, 0, ..., 0, 0, 0],
│ │ ...,
│ │ [0, 0, ...
│ └ '/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier1/_copy.py'
└ <function execute at 0x14d7d24c0>
File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier0/_execute.py", line 3, in execute
return Backend.get_instance().get().execute(anchor, opencl_kernel_filename, kernel_name, global_size, parameters, prog, constants, image_size_independent_kernel_compilation, device)
│ │ │ │ │ │ │ │ │ │ └ None
│ │ │ │ │ │ │ │ │ └ None
│ │ │ │ │ │ │ │ └ None
│ │ │ │ │ │ │ └ None
│ │ │ │ │ │ └ {'dst': cl.Array([[0, 0, 0, ..., 0, 0, 0],
│ │ │ │ │ │ [0, 0, 0, ..., 0, 0, 0],
│ │ │ │ │ │ [0, 0, 0, ..., 0, 0, 0],
│ │ │ │ │ │ ...,
│ │ │ │ │ │ ...
│ │ │ │ │ └ (254, 256)
│ │ │ │ └ 'copy_2d'
│ │ │ └ '../clij-opencl-kernels/kernels/copy_2d_x.cl'
│ │ └ '/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier1/_copy.py'
│ └ <classmethod object at 0x14d594ca0>
└ <class 'pyclesperanto_prototype._tier0._backends.Backend'>
File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier0/_opencl_backend.py", line 41, in execute
return execute(anchor, opencl_kernel_filename, kernel_name, global_size, parameters, prog, constants, image_size_independent_kernel_compilation, device)
│ │ │ │ │ │ │ │ │ └ None
│ │ │ │ │ │ │ │ └ None
│ │ │ │ │ │ │ └ None
│ │ │ │ │ │ └ None
│ │ │ │ │ └ {'dst': cl.Array([[0, 0, 0, ..., 0, 0, 0],
│ │ │ │ │ [0, 0, 0, ..., 0, 0, 0],
│ │ │ │ │ [0, 0, 0, ..., 0, 0, 0],
│ │ │ │ │ ...,
│ │ │ │ │ ...
│ │ │ │ └ (254, 256)
│ │ │ └ 'copy_2d'
│ │ └ '../clij-opencl-kernels/kernels/copy_2d_x.cl'
│ └ '/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier1/_copy.py'
└ <function execute at 0x17ea408b0>
File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier0/_opencl_execute.py", line 311, in execute
prog = device.program_from_source("\n".join(defines))
│ │ └ ['#define MAX_ARRAY_SIZE 1000', '#define GET_IMAGE_WIDTH(image_key) image_size_ ## image_key ## _width', '#define GET_IMAGE_H...
│ └ <functools._lru_cache_wrapper object at 0x14d8f5ae0>
└ <Apple M1 on Platform: Apple (75 refs)>
File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier0/_device.py", line 26, in program_from_source
return OCLProgram(src_str=source, dev=self)
│ │ └ <Apple M1 on Platform: Apple (75 refs)>
│ └ '#define MAX_ARRAY_SIZE 1000\n#define GET_IMAGE_WIDTH(image_key) image_size_ ## image_key ## _width\n#define GET_IMAGE_HEIGHT...
└ <class 'pyclesperanto_prototype._tier0._program.OCLProgram'>
File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier0/_program.py", line 28, in __init__
self.build(options=build_options)
│ │ └ []
│ └ <function Program.build at 0x14d8b8c10>
└ <pyclesperanto_prototype._tier0._program.OCLProgram object at 0x16dd59ac0>
File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyopencl/__init__.py", line 536, in build
self._prg, was_cached = self._build_and_catch_errors(
│ │ │ └ <function Program._build_and_catch_errors at 0x14d8b8ca0>
│ │ └ <pyclesperanto_prototype._tier0._program.OCLProgram object at 0x16dd59ac0>
│ └ None
└ <pyclesperanto_prototype._tier0._program.OCLProgram object at 0x16dd59ac0>
File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyopencl/__init__.py", line 584, in _build_and_catch_errors
raise err
└ RuntimeError(<pyopencl._cl._ErrorRecord object at 0x16dd548b0>)
pyopencl._cl.RuntimeError: clBuildProgram failed: BUILD_PROGRAM_FAILURE - clBuildProgram failed: BUILD_PROGRAM_FAILURE - clBuildProgram failed: BUILD_PROGRAM_FAILURE
Build on <pyopencl.Device 'Apple M1' on 'Apple' at 0x1027f00>:
Compiler encountered an internal error
(options: -I /Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyopencl/cl)
(source saved as /var/folders/sy/y3_x27j14cxg3_vhycs6cr_h0000gn/T/tmppdsr9h65.cl)
Hi @psobolewskiPhD ,
thanks for reporting! Unfortunately, I can't reproduce this issue on my M1 Mac. I guess it has something todo with other installed dependencies. Would you mind comparing your environment to mine? This is my conda list:
absl-py 1.0.0 pypi_0 pypi
alabaster 0.7.12 py_0 conda-forge
anyio 3.5.0 py39h6e9494a_0 conda-forge
apoc 0.6.2 dev_0 <develop>
appdirs 1.4.4 pyh9f0ad1d_0 conda-forge
appnope 0.1.2 py39h6e9494a_2 conda-forge
argon2-cffi 21.3.0 pyhd8ed1ab_0 conda-forge
argon2-cffi-bindings 21.2.0 py39h89e85a6_1 conda-forge
asciitree 0.3.3 py_2 conda-forge
asttokens 2.0.5 pyhd8ed1ab_0 conda-forge
astunparse 1.6.3 pypi_0 pypi
attrs 21.4.0 pyhd8ed1ab_0 conda-forge
autopep8 1.6.0 pypi_0 pypi
babel 2.9.1 pyh44b312d_0 conda-forge
backcall 0.2.0 pyh9f0ad1d_0 conda-forge
backports 1.0 py_2 conda-forge
backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge
beautifulsoup4 4.10.0 pypi_0 pypi
biapol-utilities 0.0.3 pypi_0 pypi
black 21.12b0 pyhd8ed1ab_0 conda-forge
bleach 4.1.0 pyhd8ed1ab_0 conda-forge
blosc 1.21.0 he49afe7_0 conda-forge
bokeh 2.4.2 py39h6e9494a_0 conda-forge
brotli 1.0.9 h0d85af4_6 conda-forge
brotli-bin 1.0.9 h0d85af4_6 conda-forge
brotlipy 0.7.0 py39h89e85a6_1003 conda-forge
brunsli 0.1 h046ec9c_0 conda-forge
bzip2 1.0.8 h0d85af4_4 conda-forge
c-ares 1.18.1 h0d85af4_0 conda-forge
c-blosc2 2.0.4 ha1a4663_1 conda-forge
ca-certificates 2021.10.8 h033912b_0 conda-forge
cachetools 5.0.0 pypi_0 pypi
cachey 0.2.1 pyh9f0ad1d_0 conda-forge
cellpose 1.0.0 pypi_0 pypi
certifi 2021.10.8 py39h6e9494a_1 conda-forge
cffi 1.14.6 py39hb71fe58_0 conda-forge
cfitsio 4.0.0 hb20e66c_0 conda-forge
charls 2.2.0 h046ec9c_0 conda-forge
charset-normalizer 2.0.10 pyhd8ed1ab_0 conda-forge
click 7.1.2 pypi_0 pypi
cloudpickle 2.0.0 pyhd8ed1ab_0 conda-forge
colorama 0.4.4 pyh9f0ad1d_0 conda-forge
cryptography 36.0.1 py39h209aa08_0 conda-forge
csbdeep 0.6.3 pypi_0 pypi
cycler 0.11.0 pyhd8ed1ab_0 conda-forge
cytoolz 0.11.2 py39h89e85a6_1 conda-forge
dask 2022.1.1 pyhd8ed1ab_0 conda-forge
dask-core 2022.1.1 pyhd8ed1ab_0 conda-forge
dask-image 2021.12.0 pyhd8ed1ab_0 conda-forge
dataclasses 0.8 pyhc8e2a94_3 conda-forge
dbus 1.13.6 ha13b53f_2 conda-forge
debugpy 1.5.1 py39h9fcab8e_0 conda-forge
decorator 5.1.1 pyhd8ed1ab_0 conda-forge
defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge
distributed 2022.1.1 py39h6e9494a_0 conda-forge
docstring_parser 0.13 pyhd8ed1ab_0 conda-forge
docutils 0.16 py39h6e9494a_3 conda-forge
entrypoints 0.3 pyhd8ed1ab_1003 conda-forge
executing 0.8.2 pyhd8ed1ab_0 conda-forge
expat 2.4.3 he49afe7_0 conda-forge
fasteners 0.16 pyhd8ed1ab_0 conda-forge
fastremap 1.12.2 pypi_0 pypi
flatbuffers 2.0 pypi_0 pypi
flit-core 3.6.0 pyhd8ed1ab_0 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 hab24e00_0 conda-forge
fontconfig 2.13.94 h10f422b_0 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.29.0 py39h89e85a6_0 conda-forge
freetype 2.10.4 h4cff582_1 conda-forge
freetype-py 2.2.0 pyh9f0ad1d_0 conda-forge
fsspec 2022.1.0 pyhd8ed1ab_0 conda-forge
future 0.18.2 pypi_0 pypi
gast 0.5.3 pypi_0 pypi
gettext 0.19.8.1 h7937167_1005 conda-forge
giflib 5.2.1 hbcb3906_2 conda-forge
gitdb 4.0.9 pypi_0 pypi
gitpython 3.1.26 pypi_0 pypi
glib 2.68.4 he49afe7_0 conda-forge
glib-tools 2.68.4 he49afe7_0 conda-forge
google-auth 2.6.0 pypi_0 pypi
google-auth-oauthlib 0.4.6 pypi_0 pypi
google-pasta 0.2.0 pypi_0 pypi
greenlet 1.1.2 pypi_0 pypi
grpcio 1.43.0 pypi_0 pypi
h5py 3.6.0 pypi_0 pypi
haesleinhuepf-pyqode-core 2.15.5 pypi_0 pypi
haesleinhuepf-pyqode-python 2.15.2 pypi_0 pypi
heapdict 1.0.1 py_0 conda-forge
hsluv 5.0.2 pyh44b312d_0 conda-forge
icu 69.1 he49afe7_0 conda-forge
idna 3.3 pyhd8ed1ab_0 conda-forge
imagecodecs 2021.11.20 py39h90d8905_1 conda-forge
imageio 2.14.1 pyh239f2a4_0 conda-forge
imagesize 1.3.0 pyhd8ed1ab_0 conda-forge
importlib-metadata 4.10.1 py39h6e9494a_0 conda-forge
importlib_metadata 4.10.1 hd8ed1ab_0 conda-forge
importlib_resources 5.4.0 pyhd8ed1ab_0 conda-forge
iniconfig 1.1.1 pypi_0 pypi
intervaltree 3.0.2 py_0 conda-forge
ipykernel 6.7.0 py39h71a6800_0 conda-forge
ipython 8.0.1 py39h6e9494a_0 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
ipywidgets 7.6.5 pypi_0 pypi
jbig 2.1 h0d85af4_2003 conda-forge
jedi 0.18.1 py39h6e9494a_0 conda-forge
jinja2 3.0.3 pyhd8ed1ab_0 conda-forge
joblib 1.1.0 pypi_0 pypi
jpeg 9e h0d85af4_0 conda-forge
json5 0.9.5 pyh9f0ad1d_0 conda-forge
jsonschema 3.2.0 pypi_0 pypi
jupyter 1.0.0 pypi_0 pypi
jupyter-book 0.12.1 pypi_0 pypi
jupyter-cache 0.4.3 pypi_0 pypi
jupyter-console 6.4.0 pypi_0 pypi
jupyter-server-mathjax 0.2.3 pypi_0 pypi
jupyter-sphinx 0.3.2 pypi_0 pypi
jupyter_client 7.1.2 pyhd8ed1ab_0 conda-forge
jupyter_core 4.9.1 py39h6e9494a_1 conda-forge
jupyter_server 1.13.4 pyhd8ed1ab_0 conda-forge
jupyterlab 3.2.8 pyhd8ed1ab_0 conda-forge
jupyterlab-spellchecker 0.7.2 pypi_0 pypi
jupyterlab-widgets 1.0.2 pypi_0 pypi
jupyterlab_pygments 0.1.2 pyh9f0ad1d_0 conda-forge
jupyterlab_server 2.10.3 pyhd8ed1ab_0 conda-forge
jupytext 1.11.5 pypi_0 pypi
jxrlib 1.1 h35c211d_2 conda-forge
keras 2.8.0 pypi_0 pypi
keras-preprocessing 1.1.2 pypi_0 pypi
kiwisolver 1.3.2 py39hf018cea_1 conda-forge
krb5 1.19.2 hcfbf3a7_3 conda-forge
latexcodec 2.0.1 pypi_0 pypi
lcms2 2.12 h577c468_0 conda-forge
lerc 3.0 he49afe7_0 conda-forge
libaec 1.0.6 he49afe7_0 conda-forge
libblas 3.9.0 13_osx64_openblas conda-forge
libbrotlicommon 1.0.9 h0d85af4_6 conda-forge
libbrotlidec 1.0.9 h0d85af4_6 conda-forge
libbrotlienc 1.0.9 h0d85af4_6 conda-forge
libcblas 3.9.0 13_osx64_openblas conda-forge
libclang 13.0.0 pypi_0 pypi
libcurl 7.81.0 hf45b732_0 conda-forge
libcxx 12.0.1 habf9029_1 conda-forge
libdeflate 1.8 h0d85af4_0 conda-forge
libedit 3.1.20191231 h0678c8f_2 conda-forge
libev 4.33 haf1e3a3_1 conda-forge
libffi 3.3 h046ec9c_2 conda-forge
libgfortran 5.0.0 9_3_0_h6c81a4c_23 conda-forge
libgfortran5 9.3.0 h6c81a4c_23 conda-forge
libglib 2.68.4 hd556434_0 conda-forge
libiconv 1.16 haf1e3a3_0 conda-forge
liblapack 3.9.0 13_osx64_openblas conda-forge
libllvm13 13.0.0 hd011deb_0 conda-forge
libnghttp2 1.46.0 h6f36284_0 conda-forge
libopenblas 0.3.18 openmp_h3351f45_0 conda-forge
libpng 1.6.37 h7cec526_2 conda-forge
libpq 14.1 hea3049e_1 conda-forge
libsodium 1.0.18 hbcb3906_1 conda-forge
libssh2 1.10.0 h52ee1ee_2 conda-forge
libtiff 4.3.0 hd146c10_2 conda-forge
libwebp-base 1.2.2 h0d85af4_1 conda-forge
libxml2 2.9.12 h7e28ab6_1 conda-forge
libzlib 1.2.11 h9173be1_1013 conda-forge
libzopfli 1.0.3 h046ec9c_0 conda-forge
linkify-it-py 1.0.3 pypi_0 pypi
llvm-openmp 12.0.1 hda6cdc1_1 conda-forge
llvmlite 0.38.0 pypi_0 pypi
locket 0.2.0 py_2 conda-forge
loguru 0.6.0 pypi_0 pypi
lz4-c 1.9.3 he49afe7_1 conda-forge
magicgui 0.3.4 pyhd8ed1ab_0 conda-forge
markdown 3.3.6 pypi_0 pypi
markdown-it-py 1.1.0 pypi_0 pypi
markupsafe 2.0.1 py39h89e85a6_1 conda-forge
matplotlib-base 3.5.1 py39hb07454d_0 conda-forge
matplotlib-inline 0.1.3 pyhd8ed1ab_0 conda-forge
mdit-py-plugins 0.2.8 pypi_0 pypi
mistune 0.8.4 py39h89e85a6_1005 conda-forge
monotonic 1.5 py_0 conda-forge
msgpack-python 1.0.3 py39hf018cea_0 conda-forge
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
mypy_extensions 0.4.3 py39h6e9494a_4 conda-forge
mysql-common 8.0.28 h694c41f_0 conda-forge
mysql-libs 8.0.28 h115446f_0 conda-forge
myst-nb 0.13.1 pypi_0 pypi
myst-parser 0.15.2 pypi_0 pypi
napari 0.4.14 pypi_0 pypi
napari-accelerated-pixel-and-object-classification 0.6.2 dev_0 <develop>
napari-console 0.0.4 pyhd8ed1ab_0 conda-forge
napari-plugin-engine 0.2.0 pyhd8ed1ab_2 conda-forge
napari-pyclesperanto-assistant 0.15.1 dev_0 <develop>
napari-script-editor 0.2.7 pypi_0 pypi
napari-segment-blobs-and-things-with-membranes 0.2.14 pypi_0 pypi
napari-simpleitk-image-processing 0.2.1 dev_0 <develop>
napari-skimage-regionprops 0.2.9 pypi_0 pypi
napari-svg 0.1.5 pyhd8ed1ab_0 conda-forge
napari-time-slicer 0.4.2 pypi_0 pypi
napari-tools-menu 0.1.10 pypi_0 pypi
napari-workflows 0.1.2 dev_0 <develop>
natsort 8.1.0 pypi_0 pypi
nbclassic 0.3.5 pyhd8ed1ab_0 conda-forge
nbclient 0.5.10 pyhd8ed1ab_1 conda-forge
nbconvert 6.4.1 py39h6e9494a_0 conda-forge
nbdime 3.1.1 pypi_0 pypi
nbformat 5.1.3 pyhd8ed1ab_0 conda-forge
ncurses 6.3 he49afe7_0 conda-forge
nest-asyncio 1.5.4 pyhd8ed1ab_0 conda-forge
networkx 2.6.3 pyhd8ed1ab_1 conda-forge
notebook 6.4.8 pyha770c72_0 conda-forge
npe2 0.1.2 pyhd8ed1ab_0 conda-forge
nspr 4.32 hcd9eead_1 conda-forge
nss 3.74 h31e2bf1_0 conda-forge
numba 0.55.1 pypi_0 pypi
numcodecs 0.9.1 py39h9fcab8e_2 conda-forge
numpy 1.21.5 py39h516c64c_0 conda-forge
numpydoc 1.2 pyhd8ed1ab_0 conda-forge
oauthlib 3.2.0 pypi_0 pypi
olefile 0.46 pyh9f0ad1d_1 conda-forge
opencv-python-headless 4.5.5.62 pypi_0 pypi
openjpeg 2.4.0 h6e7aa92_1 conda-forge
openssl 1.1.1l h0d85af4_0 conda-forge
opt-einsum 3.3.0 pypi_0 pypi
packaging 21.3 pyhd8ed1ab_0 conda-forge
pandas 1.4.0 py39h4d6be9b_0 conda-forge
pandoc 2.17.0.1 h694c41f_1 conda-forge
pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge
parso 0.8.3 pyhd8ed1ab_0 conda-forge
partd 1.2.0 pyhd8ed1ab_0 conda-forge
pathspec 0.9.0 pyhd8ed1ab_0 conda-forge
pcre 8.45 he49afe7_0 conda-forge
pexpect 4.8.0 pyh9f0ad1d_2 conda-forge
pickleshare 0.7.5 py_1003 conda-forge
pillow 9.0.0 pypi_0 pypi
pims 0.5 pyh9f0ad1d_1 conda-forge
pint 0.18 pyhd8ed1ab_0 conda-forge
pip 21.3.1 pyhd8ed1ab_0 conda-forge
platformdirs 2.3.0 pyhd8ed1ab_0 conda-forge
pluggy 1.0.0 pypi_0 pypi
pooch 1.6.0 pypi_0 pypi
prometheus_client 0.13.1 pyhd8ed1ab_0 conda-forge
prompt-toolkit 3.0.26 pyha770c72_0 conda-forge
protobuf 3.19.4 pypi_0 pypi
psutil 5.9.0 py39h89e85a6_0 conda-forge
psygnal 0.2.0 py39hf018cea_1 conda-forge
ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge
pure_eval 0.2.2 pyhd8ed1ab_0 conda-forge
py 1.11.0 pypi_0 pypi
pyasn1 0.4.8 pypi_0 pypi
pyasn1-modules 0.2.8 pypi_0 pypi
pybtex 0.24.0 pypi_0 pypi
pybtex-docutils 1.0.1 pypi_0 pypi
pyclesperanto-prototype 0.15.0 dev_0 <develop>
pycodestyle 2.8.0 pypi_0 pypi
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pydantic 1.9.0 py39h89e85a6_0 conda-forge
pydata-sphinx-theme 0.7.2 pypi_0 pypi
pyflakes 2.4.0 pypi_0 pypi
pygments 2.11.2 pyhd8ed1ab_0 conda-forge
pyopencl 2021.2.6 pypi_0 pypi
pyopengl 3.1.5 py_0 conda-forge
pyopenssl 21.0.0 pyhd8ed1ab_0 conda-forge
pyparsing 3.0.7 pyhd8ed1ab_0 conda-forge
pyperclip 1.8.2 pypi_0 pypi
pyqt 5.12.3 py39h6e9494a_8 conda-forge
pyqt-impl 5.12.3 py39he44290a_8 conda-forge
pyqt5 5.15.6 pypi_0 pypi
pyqt5-qt5 5.15.2 pypi_0 pypi
pyqt5-sip 12.9.0 pypi_0 pypi
pyqtchart 5.12 py39he44290a_8 conda-forge
pyqtwebengine 5.12.1 py39he44290a_8 conda-forge
pyrsistent 0.18.1 py39h89e85a6_0 conda-forge
pysocks 1.7.1 py39h6e9494a_4 conda-forge
pytest 6.2.5 pypi_0 pypi
python 3.9.0 h4f09611_5_cpython conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python_abi 3.9 2_cp39 conda-forge
pytomlpp 1.0.10 py39hf018cea_0 conda-forge
pytools 2021.2.9 pypi_0 pypi
pytz 2021.3 pyhd8ed1ab_0 conda-forge
pywavelets 1.2.0 py39hc89836e_1 conda-forge
pyyaml 6.0 py39h89e85a6_3 conda-forge
pyzmq 22.3.0 py39h7fec2f1_1 conda-forge
qt 5.12.9 h2a607e2_5 conda-forge
qtconsole 5.2.2 pyhd8ed1ab_1 conda-forge
qtconsole-base 5.2.2 pyhd8ed1ab_1 conda-forge
qtpy 2.0.0 pyhd8ed1ab_0 conda-forge
readline 8.1 h05e3726_0 conda-forge
redlionfish 0.6 pypi_0 pypi
requests 2.27.1 pyhd8ed1ab_0 conda-forge
requests-oauthlib 1.3.1 pypi_0 pypi
rsa 4.8 pypi_0 pypi
scikit-image 0.19.1 py39h4d6be9b_0 conda-forge
scikit-learn 1.0.2 pypi_0 pypi
scipy 1.7.3 py39h056f1c0_0 conda-forge
seaborn 0.11.2 pypi_0 pypi
send2trash 1.8.0 pyhd8ed1ab_0 conda-forge
setuptools 59.8.0 py39h6e9494a_0 conda-forge
shellingham 1.4.0 pyh44b312d_0 conda-forge
simpleitk 2.1.1 pypi_0 pypi
six 1.16.0 pyh6c4a22f_0 conda-forge
slicerator 1.0.0 py_0 conda-forge
smmap 5.0.0 pypi_0 pypi
snappy 1.1.8 hb1e8313_3 conda-forge
sniffio 1.2.0 py39h6e9494a_2 conda-forge
snowballstemmer 2.2.0 pyhd8ed1ab_0 conda-forge
sortedcontainers 2.4.0 pyhd8ed1ab_0 conda-forge
soupsieve 2.3.1 pypi_0 pypi
sphinx 4.4.0 pyh6c4a22f_1 conda-forge
sphinx-book-theme 0.1.10 pypi_0 pypi
sphinx-comments 0.0.3 pypi_0 pypi
sphinx-copybutton 0.4.0 pypi_0 pypi
sphinx-external-toc 0.2.3 pypi_0 pypi
sphinx-jupyterbook-latex 0.4.6 pypi_0 pypi
sphinx-multitoc-numbering 0.1.3 pypi_0 pypi
sphinx-panels 0.6.0 pypi_0 pypi
sphinx-thebe 0.0.10 pypi_0 pypi
sphinx-togglebutton 0.2.3 pypi_0 pypi
sphinxcontrib-applehelp 1.0.2 py_0 conda-forge
sphinxcontrib-bibtex 2.2.1 pypi_0 pypi
sphinxcontrib-devhelp 1.0.2 py_0 conda-forge
sphinxcontrib-htmlhelp 2.0.0 pyhd8ed1ab_0 conda-forge
sphinxcontrib-jsmath 1.0.1 py_0 conda-forge
sphinxcontrib-qthelp 1.0.3 py_0 conda-forge
sphinxcontrib-serializinghtml 1.1.5 pyhd8ed1ab_1 conda-forge
sqlalchemy 1.4.31 pypi_0 pypi
sqlite 3.37.0 h23a322b_0 conda-forge
stack_data 0.1.4 pyhd8ed1ab_0 conda-forge
stardist 0.7.3 pypi_0 pypi
superqt 0.2.5.post1 pyhd8ed1ab_0 conda-forge
tblib 1.7.0 pyhd8ed1ab_0 conda-forge
tensorboard 2.8.0 pypi_0 pypi
tensorboard-data-server 0.6.1 pypi_0 pypi
tensorboard-plugin-wit 1.8.1 pypi_0 pypi
tensorflow 2.8.0 pypi_0 pypi
tensorflow-io-gcs-filesystem 0.24.0 pypi_0 pypi
termcolor 1.1.0 pypi_0 pypi
terminado 0.13.1 py39h6e9494a_0 conda-forge
testpath 0.5.0 pyhd8ed1ab_0 conda-forge
tf-estimator-nightly 2.8.0.dev2021122109 pypi_0 pypi
threadpoolctl 3.0.0 pypi_0 pypi
tifffile 2021.11.2 pyhd8ed1ab_0 conda-forge
tk 8.6.11 h5dbffcc_1 conda-forge
toml 0.10.2 pypi_0 pypi
tomli 1.2.2 pyhd8ed1ab_0 conda-forge
toolz 0.11.2 pyhd8ed1ab_0 conda-forge
torch 1.10.2 pypi_0 pypi
tornado 6.1 py39h89e85a6_2 conda-forge
tqdm 4.62.3 pyhd8ed1ab_0 conda-forge
traitlets 5.1.1 pyhd8ed1ab_0 conda-forge
transforms3d 0.3.1 pypi_0 pypi
typed-ast 1.5.2 py39h89e85a6_0 conda-forge
typer 0.4.0 pyhd8ed1ab_0 conda-forge
typing-extensions 4.0.1 hd8ed1ab_0 conda-forge
typing_extensions 4.0.1 pyha770c72_0 conda-forge
tzdata 2021e he74cb21_0 conda-forge
uc-micro-py 1.0.1 pypi_0 pypi
unicodedata2 14.0.0 py39h89e85a6_0 conda-forge
urllib3 1.26.8 pyhd8ed1ab_1 conda-forge
vispy 0.9.4 py39h7c35a4d_0 conda-forge
wcwidth 0.2.5 pyh9f0ad1d_2 conda-forge
webencodings 0.5.1 py_1 conda-forge
websocket-client 1.2.3 pyhd8ed1ab_0 conda-forge
werkzeug 2.0.3 pypi_0 pypi
wheel 0.37.1 pyhd8ed1ab_0 conda-forge
widgetsnbextension 3.5.2 pypi_0 pypi
wrapt 1.13.3 py39h89e85a6_1 conda-forge
xz 5.2.5 haf1e3a3_1 conda-forge
yaml 0.2.5 h0d85af4_2 conda-forge
zarr 2.10.3 pyhd8ed1ab_0 conda-forge
zeromq 4.3.4 he49afe7_1 conda-forge
zfp 0.5.5 h4a89273_8 conda-forge
zict 2.0.0 py_0 conda-forge
zipp 3.7.0 pyhd8ed1ab_0 conda-forge
zlib 1.2.11 h9173be1_1013 conda-forge
zstd 1.5.2 h582d3a0_0 conda-forge
Thanks!
Here's my conda env, all quite fresh.
Only related thing that's different is my pyopencl is newer?
pyopencl 2021.2.13 pypi_0 pypi
# Name Version Build Channel
adwaita-icon-theme 41.0 ha770c72_1 conda-forge
aicsimageio 4.5.2 pyhd8ed1ab_0 conda-forge
aicspylibczi 3.0.4 pypi_0 pypi
aiohttp 3.8.1 pypi_0 pypi
aiosignal 1.2.0 pypi_0 pypi
alabaster 0.7.12 py_0 conda-forge
appdirs 1.4.4 pyh9f0ad1d_0 conda-forge
appnope 0.1.2 py39h2804cbe_2 conda-forge
argon2-cffi 21.3.0 pypi_0 pypi
argon2-cffi-bindings 21.2.0 pypi_0 pypi
asciitree 0.3.3 py_2 conda-forge
asttokens 2.0.5 pyhd8ed1ab_0 conda-forge
async-timeout 4.0.2 pypi_0 pypi
atk-1.0 2.36.0 heb41896_4 conda-forge
attrs 21.4.0 pyhd8ed1ab_0 conda-forge
autopep8 1.6.0 pypi_0 pypi
babel 2.9.1 pyh44b312d_0 conda-forge
backcall 0.2.0 pyh9f0ad1d_0 conda-forge
backports 1.0 py_2 conda-forge
backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge
black 22.1.0 pyhd8ed1ab_0 conda-forge
blas 2.113 accelerate conda-forge
blas-devel 3.9.0 13_osxarm64_accelerate conda-forge
bleach 4.1.0 pypi_0 pypi
blosc 1.21.0 h9f76cd9_0 conda-forge
bokeh 2.4.2 py39h2804cbe_0 conda-forge
brotli 1.0.9 h3422bc3_6 conda-forge
brotli-bin 1.0.9 h3422bc3_6 conda-forge
brotlipy 0.7.0 py39h5161555_1003 conda-forge
brunsli 0.1 h9f76cd9_0 conda-forge
bzip2 1.0.8 h3422bc3_4 conda-forge
c-ares 1.18.1 h3422bc3_0 conda-forge
c-blosc2 2.0.4 h0095615_1 conda-forge
ca-certificates 2021.10.8 h4653dfc_0 conda-forge
cachey 0.2.1 pyh9f0ad1d_0 conda-forge
cairo 1.16.0 he69dfd1_1008 conda-forge
certifi 2021.10.8 py39h2804cbe_1 conda-forge
cffi 1.15.0 py39h52b1de0_0 conda-forge
cfitsio 4.0.0 h99351b2_0 conda-forge
charls 2.2.0 h9f76cd9_0 conda-forge
charset-normalizer 2.0.11 pyhd8ed1ab_0 conda-forge
click 8.0.3 py39h2804cbe_1 conda-forge
cloudpickle 2.0.0 pyhd8ed1ab_0 conda-forge
colorama 0.4.4 pyh9f0ad1d_0 conda-forge
cryptography 36.0.1 py39hfb8cd70_0 conda-forge
cycler 0.11.0 pyhd8ed1ab_0 conda-forge
cytoolz 0.11.2 py39h5161555_1 conda-forge
dask 2022.1.1 pyhd8ed1ab_0 conda-forge
dask-core 2022.1.1 pyhd8ed1ab_0 conda-forge
dask-image 2021.12.0 pyhd8ed1ab_0 conda-forge
dataclasses 0.8 pyhc8e2a94_3 conda-forge
debugpy 1.5.1 py39hfb83b0d_0 conda-forge
decorator 5.1.1 pyhd8ed1ab_0 conda-forge
defusedxml 0.7.1 pypi_0 pypi
distributed 2022.1.1 py39h2804cbe_0 conda-forge
dnspython 2.2.0 pypi_0 pypi
docstring_parser 0.13 pyhd8ed1ab_0 conda-forge
docutils 0.17.1 py39h2804cbe_1 conda-forge
elementpath 2.0.5 pyhd8ed1ab_0 conda-forge
email-validator 1.1.3 pypi_0 pypi
entrypoints 0.4 pyhd8ed1ab_0 conda-forge
epoxy 1.5.9 h3422bc3_0 conda-forge
executing 0.8.2 pyhd8ed1ab_0 conda-forge
fasteners 0.17.3 pyhd8ed1ab_0 conda-forge
ffmpeg 4.3.2 ha8417bf_1 conda-forge
flake8 4.0.1 pyhd8ed1ab_1 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 hab24e00_0 conda-forge
fontconfig 2.13.96 heb65262_0 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.29.1 py39h5161555_0 conda-forge
freetype 2.10.4 h17b34a0_1 conda-forge
freetype-py 2.2.0 pyh9f0ad1d_0 conda-forge
fribidi 1.0.10 h27ca646_0 conda-forge
frozenlist 1.3.0 pypi_0 pypi
fsspec 2022.1.0 pyhd8ed1ab_0 conda-forge
gdk-pixbuf 2.42.6 hff60771_0 conda-forge
gettext 0.19.8.1 h049c9fb_1008 conda-forge
giflib 5.2.1 h27ca646_2 conda-forge
glib-tools 2.70.2 hccf11d3_2 conda-forge
gmp 6.2.1 h9f76cd9_0 conda-forge
gnutls 3.6.13 h706517b_1 conda-forge
graphite2 1.3.13 h9f76cd9_1001 conda-forge
gtk3 3.24.31 h2dc7dc9_2 conda-forge
harfbuzz 3.1.1 h13b3495_0 conda-forge
heapdict 1.0.1 py_0 conda-forge
hicolor-icon-theme 0.17 hce30654_2 conda-forge
hsluv 5.0.2 pyh44b312d_0 conda-forge
icu 68.2 hbdafb3b_0 conda-forge
idna 3.3 pyhd8ed1ab_0 conda-forge
imagecodecs 2021.11.20 py39hcb02aed_1 conda-forge
imageio 2.10.5 pypi_0 pypi
imageio-ffmpeg 0.4.5 pyhd8ed1ab_0 conda-forge
imagesize 1.3.0 pyhd8ed1ab_0 conda-forge
importlib-metadata 4.2.0 py39h2804cbe_0 conda-forge
importlib_metadata 4.2.0 hd8ed1ab_0 conda-forge
importlib_resources 5.4.0 pyhd8ed1ab_0 conda-forge
intervaltree 3.0.2 py_0 conda-forge
ipykernel 6.9.0 py39h32adebf_0 conda-forge
ipython 8.0.1 py39h2804cbe_0 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
ipywidgets 7.6.5 pypi_0 pypi
isort 5.10.1 pyhd8ed1ab_0 conda-forge
jbig 2.1 h3422bc3_2003 conda-forge
jedi 0.18.1 py39h2804cbe_0 conda-forge
jinja2 3.0.3 pyhd8ed1ab_0 conda-forge
jpeg 9e h3422bc3_0 conda-forge
jsonschema 4.4.0 pyhd8ed1ab_0 conda-forge
jupyter 1.0.0 pypi_0 pypi
jupyter-console 6.4.0 pypi_0 pypi
jupyter_client 7.1.2 pyhd8ed1ab_0 conda-forge
jupyter_core 4.9.1 py39h2804cbe_1 conda-forge
jupyterlab-pygments 0.1.2 pypi_0 pypi
jupyterlab-widgets 1.0.2 pypi_0 pypi
jupytext 1.13.7 pypi_0 pypi
jxrlib 1.1 h27ca646_2 conda-forge
kiwisolver 1.3.2 py39h4d2d688_1 conda-forge
krb5 1.19.2 hd92b7a7_3 conda-forge
lame 3.100 h27ca646_1001 conda-forge
lcms2 2.12 had6a04f_0 conda-forge
lerc 3.0 hbdafb3b_0 conda-forge
libaec 1.0.6 hbdafb3b_0 conda-forge
libblas 3.9.0 13_osxarm64_accelerate conda-forge
libbrotlicommon 1.0.9 h3422bc3_6 conda-forge
libbrotlidec 1.0.9 h3422bc3_6 conda-forge
libbrotlienc 1.0.9 h3422bc3_6 conda-forge
libcblas 3.9.0 13_osxarm64_accelerate conda-forge
libcurl 7.81.0 h8fe1914_0 conda-forge
libcxx 12.0.1 h168391b_1 conda-forge
libdeflate 1.8 h3422bc3_0 conda-forge
libedit 3.1.20191231 hc8eb9b7_2 conda-forge
libev 4.33 h642e427_1 conda-forge
libffi 3.4.2 h3422bc3_5 conda-forge
libgfortran 5.0.0.dev0 11_0_1_hf114ba7_23 conda-forge
libgfortran5 11.0.1.dev0 hf114ba7_23 conda-forge
libglib 2.70.2 h67e64d8_2 conda-forge
libiconv 1.16 h642e427_0 conda-forge
libjpeg-turbo 2.1.1 h3422bc3_0 conda-forge
liblapack 3.9.0 13_osxarm64_accelerate conda-forge
liblapacke 3.9.0 13_osxarm64_accelerate conda-forge
libnghttp2 1.46.0 he4cd7f6_0 conda-forge
libopenblas 0.3.18 openmp_h5dd58f0_0 conda-forge
libpng 1.6.37 hf7e6567_2 conda-forge
libpq 13.5 h8bb6238_1 conda-forge
librsvg 2.52.5 h957afdb_1 conda-forge
libsodium 1.0.18 h27ca646_1 conda-forge
libssh2 1.10.0 hb80f160_2 conda-forge
libtiff 4.3.0 h74060c4_2 conda-forge
libwebp 1.2.2 h0d20362_0 conda-forge
libwebp-base 1.2.2 h3422bc3_1 conda-forge
libxcb 1.13 h9b22ae9_1004 conda-forge
libxml2 2.9.12 h538f51a_0 conda-forge
libxslt 1.1.33 hd2240da_2 conda-forge
libzlib 1.2.11 hee7b306_1013 conda-forge
libzopfli 1.0.3 h9f76cd9_0 conda-forge
llvm-openmp 12.0.1 hf3c4609_1 conda-forge
locket 0.2.0 py_2 conda-forge
loguru 0.6.0 pypi_0 pypi
lxml 4.7.1 py39h3757d6e_0 conda-forge
lz4-c 1.9.3 hbdafb3b_1 conda-forge
magicgui 0.3.4 pyhd8ed1ab_0 conda-forge
markdown-it-py 1.1.0 pypi_0 pypi
markupsafe 2.0.1 py39h5161555_1 conda-forge
matplotlib-base 3.5.1 py39h5aa4fe7_0 conda-forge
matplotlib-inline 0.1.3 pyhd8ed1ab_0 conda-forge
mccabe 0.6.1 py_1 conda-forge
mdit-py-plugins 0.3.0 pypi_0 pypi
mistune 0.8.4 pypi_0 pypi
mrc 0.2.0 pypi_0 pypi
msgpack-python 1.0.3 py39h4d2d688_0 conda-forge
multidict 6.0.2 pypi_0 pypi
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
mypy_extensions 0.4.3 py39h2804cbe_4 conda-forge
mysql-common 8.0.28 hce30654_0 conda-forge
mysql-libs 8.0.28 h577abee_0 conda-forge
napari 0.4.14 pyhd8ed1ab_0 conda-forge
napari-aicsimageio 0.4.1 pypi_0 pypi
napari-console 0.0.4 pyhd8ed1ab_0 conda-forge
napari-plugin-engine 0.2.0 pyhd8ed1ab_2 conda-forge
napari-pyclesperanto-assistant 0.15.1 pypi_0 pypi
napari-skimage-regionprops 0.2.9 pypi_0 pypi
napari-svg 0.1.5 pyhd8ed1ab_0 conda-forge
napari-time-slicer 0.4.3 pypi_0 pypi
napari-tools-menu 0.1.10 pypi_0 pypi
napari-workflows 0.1.5 pypi_0 pypi
nbclient 0.5.10 pypi_0 pypi
nbconvert 6.4.2 pypi_0 pypi
nbformat 5.1.3 pypi_0 pypi
ncurses 6.3 hc470f4d_0 conda-forge
nd2 0.1.4 pypi_0 pypi
nest-asyncio 1.5.4 pyhd8ed1ab_0 conda-forge
nettle 3.6 hc6a1b29_0 conda-forge
networkx 2.6.3 pyhd8ed1ab_1 conda-forge
notebook 6.4.8 pypi_0 pypi
npe2 0.1.2 pyhd8ed1ab_0 conda-forge
nspr 4.32 hbdafb3b_1 conda-forge
nss 3.74 h353d031_0 conda-forge
numcodecs 0.9.1 py39hfb83b0d_2 conda-forge
numpy 1.22.2 py39h61a45d2_0 conda-forge
numpydoc 1.2 pyhd8ed1ab_0 conda-forge
ome-types 0.2.9 pyhd8ed1ab_0 conda-forge
openblas 0.3.18 openmp_h3b88efd_0 conda-forge
openh264 2.1.1 habe5f53_0 conda-forge
openjpeg 2.4.0 h062765e_1 conda-forge
openssl 1.1.1l h3422bc3_0 conda-forge
packaging 21.3 pyhd8ed1ab_0 conda-forge
pandas 1.4.0 py39h7f752ed_0 conda-forge
pandocfilters 1.5.0 pypi_0 pypi
pango 1.48.10 h26a1e14_2 conda-forge
parso 0.8.3 pyhd8ed1ab_0 conda-forge
partd 1.2.0 pyhd8ed1ab_0 conda-forge
pathspec 0.9.0 pyhd8ed1ab_0 conda-forge
pcre 8.45 hbdafb3b_0 conda-forge
pexpect 4.8.0 pyh9f0ad1d_2 conda-forge
pickleshare 0.7.5 py_1003 conda-forge
pillow 8.4.0 pypi_0 pypi
pims 0.5 pyh9f0ad1d_1 conda-forge
pint 0.18 pyhd8ed1ab_0 conda-forge
pip 22.0.3 pyhd8ed1ab_0 conda-forge
pixman 0.40.0 h27ca646_0 conda-forge
platformdirs 2.4.1 pyhd8ed1ab_1 conda-forge
pooch 1.6.0 pyhd8ed1ab_0 conda-forge
prometheus-client 0.13.1 pypi_0 pypi
prompt-toolkit 3.0.26 pyha770c72_0 conda-forge
psutil 5.9.0 py39h5161555_0 conda-forge
psygnal 0.2.0 py39h4d2d688_1 conda-forge
pthread-stubs 0.4 h27ca646_1001 conda-forge
ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge
pure_eval 0.2.2 pyhd8ed1ab_0 conda-forge
pyclesperanto-prototype 0.15.0 pypi_0 pypi
pycodestyle 2.8.0 pyhd8ed1ab_0 conda-forge
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pydantic 1.9.0 py39h5161555_0 conda-forge
pyflakes 2.4.0 pyhd8ed1ab_0 conda-forge
pygments 2.11.2 pyhd8ed1ab_0 conda-forge
pyopencl 2021.2.13 pypi_0 pypi
pyopengl 3.1.5 py_0 conda-forge
pyopenssl 22.0.0 pyhd8ed1ab_0 conda-forge
pyparsing 3.0.7 pyhd8ed1ab_0 conda-forge
pyperclip 1.8.2 pypi_0 pypi
pyqt 5.15.4 py39h70deae4_1 andfoy
pyqt5-sip 12.9.0 py39h70deae4_1 andfoy
pyrsistent 0.18.1 py39h5161555_0 conda-forge
pysocks 1.7.1 py39h2804cbe_4 conda-forge
python 3.9.10 hd16f9c5_2_cpython conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python_abi 3.9 2_cp39 conda-forge
pytomlpp 1.0.10 py39h4d2d688_0 conda-forge
pytools 2021.2.9 pypi_0 pypi
pytz 2021.3 pyhd8ed1ab_0 conda-forge
pyvkfft 2022.1 pypi_0 pypi
pywavelets 1.2.0 py39h20ef057_1 conda-forge
pyyaml 6.0 py39h5161555_3 conda-forge
pyzmq 22.3.0 py39h02c6a76_1 conda-forge
qt 5.15.2 h70deae4_6 andfoy
qtconsole 5.2.2 pyhd8ed1ab_1 conda-forge
qtconsole-base 5.2.2 pyhd8ed1ab_1 conda-forge
qtpy 2.0.1 pyhd8ed1ab_0 conda-forge
readlif 0.6.5 pypi_0 pypi
readline 8.1 hedafd6a_0 conda-forge
requests 2.27.1 pyhd8ed1ab_0 conda-forge
scikit-image 0.19.1 py39h7f752ed_0 conda-forge
scipy 1.8.0 py39h5060c3b_1 conda-forge
send2trash 1.8.0 pypi_0 pypi
setuptools 59.8.0 py39h2804cbe_0 conda-forge
shellingham 1.4.0 pyh44b312d_0 conda-forge
sip 6.1.0 py39h8a0c2ca_2 andfoy
six 1.16.0 pyh6c4a22f_0 conda-forge
slicerator 1.0.0 py_0 conda-forge
snappy 1.1.8 hc88da5d_3 conda-forge
snowballstemmer 2.2.0 pyhd8ed1ab_0 conda-forge
sortedcontainers 2.4.0 pyhd8ed1ab_0 conda-forge
sphinx 4.3.2 pyh6c4a22f_0 conda-forge
sphinxcontrib-applehelp 1.0.2 py_0 conda-forge
sphinxcontrib-devhelp 1.0.2 py_0 conda-forge
sphinxcontrib-htmlhelp 2.0.0 pyhd8ed1ab_0 conda-forge
sphinxcontrib-jsmath 1.0.1 py_0 conda-forge
sphinxcontrib-qthelp 1.0.3 py_0 conda-forge
sphinxcontrib-serializinghtml 1.1.5 pyhd8ed1ab_1 conda-forge
sqlite 3.37.0 h72a2b83_0 conda-forge
stack_data 0.1.4 pyhd8ed1ab_0 conda-forge
superqt 0.2.5.post1 pyhd8ed1ab_0 conda-forge
tblib 1.7.0 pyhd8ed1ab_0 conda-forge
terminado 0.13.1 pypi_0 pypi
testpath 0.5.0 pypi_0 pypi
tifffile 2022.2.2 pyhd8ed1ab_0 conda-forge
tk 8.6.11 he1e0b03_1 conda-forge
toml 0.10.2 pyhd8ed1ab_0 conda-forge
tomli 2.0.1 pyhd8ed1ab_0 conda-forge
toolz 0.11.2 pyhd8ed1ab_0 conda-forge
tornado 6.1 py39h5161555_2 conda-forge
tqdm 4.62.3 pyhd8ed1ab_0 conda-forge
traitlets 5.1.1 pyhd8ed1ab_0 conda-forge
transforms3d 0.3.1 pypi_0 pypi
typed-ast 1.5.2 py39h5161555_0 conda-forge
typer 0.4.0 pyhd8ed1ab_0 conda-forge
typing-extensions 4.0.1 hd8ed1ab_0 conda-forge
typing_extensions 4.0.1 pyha770c72_0 conda-forge
tzdata 2021e he74cb21_0 conda-forge
unicodedata2 14.0.0 py39h5161555_0 conda-forge
urllib3 1.26.8 pyhd8ed1ab_1 conda-forge
vispy 0.9.6 py39h5861bad_0 conda-forge
wcwidth 0.2.5 pyh9f0ad1d_2 conda-forge
webencodings 0.5.1 pypi_0 pypi
wheel 0.37.1 pyhd8ed1ab_0 conda-forge
widgetsnbextension 3.5.2 pypi_0 pypi
wrapt 1.13.3 py39h5161555_1 conda-forge
wurlitzer 3.0.2 pypi_0 pypi
x264 1!161.3030 h3422bc3_1 conda-forge
xarray 0.21.1 pyhd8ed1ab_0 conda-forge
xmlschema 1.4.1 pyhd8ed1ab_0 conda-forge
xorg-libxau 1.0.9 h27ca646_0 conda-forge
xorg-libxdmcp 1.1.3 h27ca646_0 conda-forge
xz 5.2.5 h642e427_1 conda-forge
yaml 0.2.5 h3422bc3_2 conda-forge
yarl 1.7.2 pypi_0 pypi
zarr 2.11.0 pyhd8ed1ab_0 conda-forge
zeromq 4.3.4 hbdafb3b_1 conda-forge
zfp 0.5.5 hcfdfaf5_8 conda-forge
zict 2.0.0 py_0 conda-forge
zipp 3.7.0 pyhd8ed1ab_1 conda-forge
zlib 1.2.11 hee7b306_1013 conda-forge
zstd 1.5.2 h861e0a7_0 conda-forge
BTW, im curious about your pyqt5 and tensorflow 2.8 from pypi--is your M1 env an x86 rosetta one? That would be a pretty big difference from my arm64 env.
You can use lipo -info on your python binary.
╰─ which python (napari-CL) ─╯
/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/bin/python
╭─ ~ ···································································· ✔ ─╮
╰─ lipo -info /Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/bin/python
Non-fat file: /Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/bin/python is architecture: arm64
Is your conda from conda-forge or anaconda? the latter is x86 only I believe. The former has arm64 (and is endorsed by Apple).
conda info:
active environment : napari-CL
active env location : /Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL
shell level : 2
user config file : /Users/piotrsobolewski/.condarc
populated config files : /Users/piotrsobolewski/Dev/miniforge3/.condarc
/Users/piotrsobolewski/.condarc
conda version : 4.11.0
conda-build version : not installed
python version : 3.10.2.final.0
virtual packages : __osx=12.1=0
__unix=0=0
__archspec=1=arm64
base environment : /Users/piotrsobolewski/Dev/miniforge3 (writable)
conda av data dir : /Users/piotrsobolewski/Dev/miniforge3/etc/conda
conda av metadata url : None
channel URLs : https://conda.anaconda.org/conda-forge/osx-arm64
https://conda.anaconda.org/conda-forge/noarch
package cache : /Users/piotrsobolewski/Dev/miniforge3/pkgs
/Users/piotrsobolewski/.conda/pkgs
envs directories : /Users/piotrsobolewski/Dev/miniforge3/envs
/Users/piotrsobolewski/.conda/envs
platform : osx-arm64
user-agent : conda/4.11.0 requests/2.27.1 CPython/3.10.2 Darwin/21.2.0 OSX/12.1
UID:GID : 501:20
netrc file : None
offline mode : False
You can use
lipo -infoon your python binary.
Non-fat file: /Users/haase/opt/anaconda3/envs/bio_39/bin/python is architecture: x86_64
I'm not sure how to proceed from here. My experience with rosetta and arm is limited.
So that confirms you're using x86 python env from anaconda, so if you're on an M1 mac it's running in emulation via so-called Rosetta2. This would suggest the issue I'm experiencing in my native arm64 env may be related to architecture differences between x86 and arm64.