mnnpy
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Hi @chriscainx
I am trying to figure out Usage section. I have several questions:
- Where do you get files such as
Sample1.h5ad? - Where do you get function
load_from_file("Some HVGs.csv")and this csv file? - How did you determine that
batch_categories = ["N0123X", "N0124X", "T0124X"]and why not anything else?
Sample1.h5adis a data file made from single-cell sequencing data using scanpy;load_from_file("Some HVGs.csv")represents the general process of getting a list of HVGs. in my workflow I saved HVGs in a csv file and read it using pandas.- It is an example picked out from my workflow. Those are the real names of my samples.