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improve readme

Open stashkov opened this issue 7 years ago • 1 comments

Hi @chriscainx

I am trying to figure out Usage section. I have several questions:

  • Where do you get files such as Sample1.h5ad?
  • Where do you get function load_from_file("Some HVGs.csv") and this csv file?
  • How did you determine that batch_categories = ["N0123X", "N0124X", "T0124X"] and why not anything else?

stashkov avatar May 21 '18 15:05 stashkov

  • Sample1.h5ad is a data file made from single-cell sequencing data using scanpy;
  • load_from_file("Some HVGs.csv") represents the general process of getting a list of HVGs. in my workflow I saved HVGs in a csv file and read it using pandas.
  • It is an example picked out from my workflow. Those are the real names of my samples.

chriscainx avatar May 22 '18 02:05 chriscainx