strange behavior for gene validator

[jjgao]

try PAQR10:

[jjgao]

It was related to this: https://github.com/cBioPortal/cbioportal/issues/6835

[inodb]

There are many genes with duplicate symbols: https://docs.google.com/spreadsheets/d/1faa6pufHkwlFFNhSOIE4X-c8Z-rrB2GJof7L_QviXOs/edit#gid=0. We can try to manually replace maybe some as a temp fix while @rmadupuri et al continue the switch to HGNC effort

[jjgao]

Yichao will review the protein coding genes that have multiple entrez gene IDs and fix them in the database: https://docs.google.com/spreadsheets/d/1faa6pufHkwlFFNhSOIE4X-c8Z-rrB2GJof7L_QviXOs/edit#gid=1770544155

[yichaoS]

@jjgao @inodb The results are in this spreadsheet uploaded here. Some entrez ID can be clearly removed but a lot of them are still fuzzy. I posted the specific TODOs and questions for each gene in this sheet. db_duplicate_protein_coding_genes.xlsx

[jjgao]

@yichaoS I forgot what we decided. Are we going to manually remove the redundant ones. Or are we going to fix this as the gene data refreshing effort?

[stale[bot]]

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

[stale[bot]]

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.