cipher-workflow-platform icon indicating copy to clipboard operation
cipher-workflow-platform copied to clipboard

verified publisher icon c-guzman
→

Metadata

A data processing platform for ChIP-seq, RNA-seq, MNase-seq, DNase-seq, ATAC-seq and GRO-seq datasets. Please ignore information on cipher.readthedocs.io, it is currently out of date. Follow informati...

Results 3 cipher-workflow-platform issues
Sort by recently updated
recently updated
newest added

Atac-Seq

2 comment

Hi, Thanks for this pipeline. I was trying to use it on atac-seq data. I got the following error message: `Caused by: Process bamCoverage (1) terminated with an error exit...

jsalignon avatar jsalignon

resample

Hi, I found out that the subsample process is pretty slow. I have tried the reformat.sh function to subsample 155M PE reads in just 100 PE reads and it takes...

jsalignon avatar jsalignon

set threads=12 but still submit single cpu job to the cluster

9 comment

Do I need to add 'cpus=12' to the nextflow configure file? But this may cause all jobs with a requirement of 12 logic cpus.

shenscore avatar shenscore

← Metadata

19
Stars
5
Forks
Watchers

Owner

verified publisher icon c-guzman

Metadata

A data processing platform for ChIP-seq, RNA-seq, MNase-seq, DNase-seq, ATAC-seq and GRO-seq datasets. Please ignore information on cipher.readthedocs.io, it is currently out of date. Follow informati...

Back