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Handle RefSeq transcript annotations in canonical transcripts pipeline

Open nawatts opened this issue 3 years ago • 0 comments

VEP annotations for Ensembl transcripts do not include version numbers, whereas annotations for RefSeq transcripts do.

For RefSeq transcripts, the version number needs to be removed when collecting canonical transcripts to match how Ensembl transcripts are handled.

https://github.com/broadinstitute/gnomad-browser/blob/b4e38686e23fe4a31ff7c9541fe78b82b4df286b/data-pipeline/src/data_pipeline/data_types/canonical_transcript.py#L11

nawatts avatar Jan 10 '22 19:01 nawatts