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Cache VEP annotations for ClinVar variants

Open nawatts opened this issue 4 years ago • 1 comments

Caching VEP annotations (instead of re-running VEP on all variants each time) would speed up the ClinVar pipeline. This would be nice for updating ClinVar data more frequently.

nawatts avatar Jan 15 '21 18:01 nawatts

Can possibly copy the Hail Table output by the last run of the VEP task before running the VEP task and use that table as the cache.

nawatts avatar Mar 10 '21 22:03 nawatts