Rik Smith-Unna

Tests

1

Having even a very simple testing setup would make contributing to the repo a better experience. Perhaps it could start out as a script that runs eXpress for a bunch...

double free or corruption

3

Probably caused by my shoddy TPM hack... ``` You are using eXpress v1.5.0, which is the most recent release. 2013-Nov-25 18:12:50 - Attempting to read 'snapout.sam' in BAM format... 2013-Nov-25...

README gives incorrect info on pragma and vacuum

1

The README file states that pragma and vacuum queries are update statements, but in fact they are queries. Contrary to what the README says, one must use executeQuery with pragma...

It should be possible to exactly repeat a run

reuse objective results if outputs are exactly the same as a previous run

1

Currently, objectives are run for the output of every target run. In some use cases (e.g. transcriptome assembly), multiple different parameter sets will result in exactly the same assembly. Let's...

let's get it up to an A on code climate

Some deprecated API calls

2

``` (electron) ipc module is deprecated. Use require("electron").ipcMain instead. (electron) loadUrl is deprecated. Use loadURL instead. (electron) 'clicked' event is deprecated. Use 'click' event instead. ```

Prevent 'copy link' action before `dat link` has completed

1

Sharing a directory, then while the spinner is still visible right-clicking and choosing 'copy link' leads to: ``` "Uncaught TypeError: Error processing argument -1.\n/Users/rds45/code/karissa/dat-desk/static/index.js:90" ```