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ProtParam tutorial

Open Baytars opened this issue 4 years ago • 2 comments

I have discovered some code that may be using ProtParam service (package org.biojava.nbio.aaproperties?). Any tutorial for using the package to achieve similar functionality to ProtParam, say, get amino acids percents?

Baytars avatar Jan 24 '21 07:01 Baytars

Package biojava-aa-prop contains code to calculate aminoacid/peptide properties. Unfortunately it is not currently covered in the tutorial, but there is a small demo in the demo package within the module, plus a few tests in src/test (e.g. PeptidePropertiesImplTest) that should make it not too difficult to get started.

josemduarte avatar Jan 25 '21 16:01 josemduarte

Package biojava-aa-prop contains code to calculate aminoacid/peptide properties. Unfortunately it is not currently covered in the tutorial, but there is a small demo in the demopackage within the module, plus a few tests insrc/test(e.g.PeptidePropertiesImplTest`) that should make it not too difficult to get started.

Thanks for your guidance! I'll check it out!

Baytars avatar Jan 26 '21 15:01 Baytars