JDLL
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bioimage-io
The Java library to run Deep Learning models
Can JJDLL run in the Android app known as Termux? Termux is a Linux terminal emulator for Android but its file structure is not identical to Linux. Libraries writtwn in...
Hi! This issue is to follow the discussion with @uschmidt83 in issue https://github.com/stardist/stardist/issues/68 and see if there's something that would be nice to consider for all the plugins. I include...
Downloading from Zenodo sometimes resulted in the following exception: java.security.cert.CertificateException: No subject alternative DNS name matching zenodo.org found * There is a workaround for this exception described here: https://stackoverflow.com/questions/19540289/how-to-fix-the-java-security-cert-certificateexception-no-subject-alternative *...
So, I got pulled in JDLL by the spanish people on Prague I was looking at the readme and the first thing I thought is that I might help you,...
I think there is quite a bit of unnecessary back-and-forth transposition of axes currently. Here is how it should work: Assume Python wants a `numpy.ndarray` with axis `CYX` (in c...
Hi, I can't find the icy online plugin for JDLL. So the same as FIJI, I download 64bit newest version for Fiji
As of this writing, JDLL supports running models, but not training / retraining / fine tuning. There is an open question about whether it should do so in an engine-agnostic...
As suggested by @axtimwalde at today's BDV/ImgLib2 meeting: it would be nice if JDLL had engine-agnostic API for choosing which GPU to use, when a machine has access to multiple...
Once we have the `ModelInfo` class (https://github.com/bioimage-io/model-runner-java/issues/8) we can use this to automatically configure the input and output Tensors (at least partially).
For configuring cellpose or stardist python environments in DeepImagej, I noticed that you use 'pip' install. Have you considered using 'uv' ? It's a python package manager developed in Rusy...
