HCPPipelines
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bids-apps
A BIDS App for minimal preprocessing using the HCP Pipelines
Dear @rhancockn, @neurosutton, @bpinsard @Remi-Gau and I are trying to get the HCPPipelines bids-app updated and tested again :) We are currently running into the problem that the test data...
ā image too big to run on github š« in circle ci missing metadata in data to run
With the dockerized version v4.1.3-1 I get the following error: ``` File "/run.py", line 275, in t1_spacing = layout.get_metadata(t1ws[0])["DwellTime"] KeyError: 'DwellTime' ``` Any advice? Thanks!
Hello. We are running HCPpipeline `docker://bids/hcppipelines:v4.1.3-1`. When we feed t1w and t2w input file, we run into the following error message. ``` Fri Feb 18 18:17:36 EST 2022:T2wToT1wReg.sh: START: T2w2T1Reg...
Hey everyone, I'm trying to run the BIDS App using a singularity on a cluster, but some of subject keep failing when they reach the FreeSurfer2CaretConvertAndRegisterNonlinear.sh point. I get the...
Hi, I ran the HCP Pipeline on a BIDS dataset using a singularity and I'm up to the stage of denoising, I was wondering if anyone had already implemented ICA-FIX?...
Hello, I posted this on the hcp-users group but it seems to be more specific to the BIDS app: I am trying to run the HCPPipelines BIDS app on a...
Hi, Iām trying to run the HCPPipelines BIDS app on some of my data using a singularity image that I built from the docker container (version 4.1.3-1). There is no...
Hi, The size of the Docker image pulled from [Docker hub](https://hub.docker.com/r/bids/hcppipelines) is huge, since it contains FSL, FreeSurfer, etc. However, as far as I can tell, there are many, many...
