Anders Sune Pedersen
Anders Sune Pedersen
Could you share your `file.csv` with us?
An example that might need to be taken into consideration is that, in the [nf-module](https://github.com/nf-core/modules/blob/master/modules/nf-core/bwa/mem/main.nf) for bwa, the command used to retrieve the version information is `bwa 2>&1` and that...
Yeah, we need to fix that. In the mean time, you can unpack the bundle using `ar` and get hold of the module-file you need. EDIT: Your fix is also...
Hi @jbague 👋 Could the coverage reports from `mosdepth` be what you're looking for? https://nf-co.re/sarek/3.4.4/docs/output/#mosdepth You can find examples of those reports here: https://nf-co.re/sarek/3.4.4/results/sarek/results-5cc30494a6b8e7e53be64d308b582190ca7d2585/test_full_aws/reports/mosdepth/HCC1395N/ They are part of the output...
Looks like the sentieon tests are passing 🤩
> > > How about making the change just one place centrally? Something like > > > `params.tools = params.tools.toLowerCase()` > > > in `sarek.nf`? Then there should be no...
> Hello! I merged #2840 to this branch and modified the code a little bit, I hope it's ok :) I think applying the patch was working as expected. >...
> > Hello! I merged #2840 to this branch and modified the code a little bit, I hope it's ok :) I think applying the patch was working as expected....
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