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Installation help: the output of scripts/install_third_party_dependencies.sh

4

Hello openfold team: Thank you for your support. I tried to install openfold on a RHEL7.9 server by following README installation section. The command $ scripts/install_third_party_dependencies.sh successfully installed many packages,...

ryao-mdanderson

Hopefully a useful suggestion: local install of openfold, when attempting to run get: from scripts.utils import add_data_args ModuleNotFoundError: No module named 'scripts.utils' this was due to an existing "scripts" package...

OH-AU

Thanks for releasing the OpenFold code for structure prediction！ However, I wonder if it is possible to train the ESMFold model based on OpenFold. To be specific, I want to...

pengshuang

compare the predicted and actual structure

4

Hi, I was wondering which python library did you use to compare the predicted and actual structure. something similar to this. Thanks

mukulem

The procedure of making the self-distillation data.

2

I'm curious about `.pdb` files your kindly provided for self-distillation. Were they predicted using official AF2 weights or the openfold initial training weights trained from scratch?

JinyuanSun

## Background First, I want to thank everyone that has contributed to OpenFold’s development, as well as the development of RODA. I really value the hard work that has gone...

jonathanking

This should be a config arg but I am not sure how to go about that without messing things up.

jyaacoub

* Fixes `atom37_to_atom14` tensor shape errors in `all_atom_multimer.py`

amorehead

* Refactor all the shell scripting setup to be done by %shell iPython calls * Change pip usage so that openfold code is checked out from the main branch of...

afairley

Thank you for your great work! I noticed that `rigid_utils` is used for monomers, while `geometry` is used for multimers in code implementation. Why was an extra module `geometry` created...

wtni-gidle