Using evoformer as a Standalone Module for MSA Embedding

[real-junjiezhang]

Hello,

Thanks for your great work in advance!

I'm interested in using the evoformer component independently from the full Protenix pipeline. Specifically, I would like to know if it's possible to utilize only the evoformer part where:

Input: An MSA (a3m file) Output: The embedding of the MSA produced by evoformer

My plan is to integrate evoformer as an independent module in my code and retrain just this part. Could you please advise if this approach is feasible? Are there any inherent dependencies or modifications required to decouple evoformer from the rest of the system?

Thank you for your help and looking forward to your guidance!

Bests