ERROR: Could find neither hhm_db nor a3m_db!

[liweiqing1997]

May I ask why this error occurs, I have confirmed that the relevant database and file paths are correct as required. However, using docker does not have this error when the args file path parameters are the same.

jackhmmer_uniref90_runner done jackhmmer_mgnify_runner done ERROR:root:HHblits failed. HHblits stderr begin: ERROR:root:- 16:09:56.345 ERROR: Could find neither hhm_db nor a3m_db! ERROR:root:HHblits stderr end Traceback (most recent call last): File "run_pretrained_openfold.py", line 455, in main(args) File "run_pretrained_openfold.py", line 283, in main precompute_alignments(tags, seqs, alignment_dir, args) File "run_pretrained_openfold.py", line 77, in precompute_alignments tmp_fasta_path, local_alignment_dir File "/data/lwq/openfold-1.0.0/openfold/data/data_pipeline.py", line 452, in run hhblits_bfd_uniclust_result = ( File "/data/lwq/openfold-1.0.0/openfold/data/tools/hhblits.py", line 162, in query % (stdout.decode("utf-8"), stderr[:500_000].decode("utf-8")) RuntimeError: HHblits failed stdout:

stderr:

• 16:09:56.345 ERROR: Could find neither hhm_db nor a3m_db!

[yamule]

It may be a permissions issue. https://github.com/deepmind/alphafold/issues/202

[liweiqing1997]

It may be a permissions issue. deepmind/alphafold#202

That's true, thanks