Andrew Kern

Yeah I agree- this is too much of the same code repeated. One thing that I was having a hard time wrapping my head around is how to generalize this...

so i think it's a bit easier than this? all of the trajectories that we currently want (hard sweeps, soft sweeps, these neutral fixations) can be generated by the current...

other use cases that I can think of that we would want to cover would be: 1. hard partial sweeps (hard sweep that ends at freq < 1; already can...

so the biggest issue i see in separating the trajectory generation from the model entirely is that eventually (a few PRs down the road) we will want to get the...

> So, we try to abstract out the details of everything _except_ the core function for transitioning an allele frequency randomly. All the parameters that we need are encapsulated in...

i've never figured out the details of how to simulate alleles sweeping through multiple populations simultaneously in the coalescent. the weird bit is specifying the how / when of the...

resurrected this cause of recent attention on slack, #1955, #1962 should we try to pull this functionality in finally?

this is great @molpopgen! i'm totally game to work on implementing these things. while dealing with dominance is important eventually, i think the first thing to knock out is the...

> No matter what, we want the defaults to reflect common use cases, allowing you to do things like remake a figure from a 2002 paper in 1/2 screen of...

diploSHIC training is gonna fly once this is done.