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Pairwise string alignment in Python (Needleman-Wunsch and Smith-Waterman algorithms)

Pairwise string alignment in Python

My contribution will be:

  • Code cleanup
  • Support of arbitrary alphabets of input strings (no similarity matrix)
  • Support of both variants:
    1. Smith-Waterman = local alignment
    2. Needleman-Wunsch = global alignment

Original Smith-Waterman implementation in Python was forked from http://narnia.cs.ttu.edu/drupal/node/104 by Forrest Sheng Bao http://fsbao.net a free software licensed under GNU General Public License (GPL)

A copy of GPL version 3 has been placed into the file LICENSE.

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Pairwise string alignment in Python (Needleman-Wunsch and Smith-Waterman algorithms)

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