akaviaLab

Okay - can you deal with that please? I don't understand optlang that well.

Is this still valid? I thought that notes are read/written (no parsing), but done.

Either would work, since cobra_group.name is assigned group.getName() higher in the code. I'm partial to group.getName, but pick whichever makes sense to you. Can the patch writer maybe add a...

I'll try it with the newer version and with GATK segmentation. I assume that means using GATK4 as the segmentation function, correct? What do you mean by lower coverage? The...

I've seen an issue where you recommend setting this parameter as 1 (I think https://github.com/lima1/PureCN/issues/279), but is there an intermediate value you'd recommend? Also, I have a mixture of coverage...

I will be able to fix this in a week or so, when I get a better computer. My computer is limping along right now. Is there an explanation of...

On Mon, Jun 30, 2025 at 1:12 PM Simon Pearce ***@***.***> wrote: > *SPPearce* left a comment (nf-core/modules#8701) > > > I would imagine the logic for rounding is to...

I feel like I'm not communicating well. round(1E-4, digits=3) => 0 sprintf('%.3g', 1E-4) => 1.0E-4 Limiting the number of digits reported is a good thing, but using the specific round()...

Hi Simon I've been working on fixing the code, now that I have my dev environment set up. After changing the code, I run nf-test, and get a different snapshot....

I think the gprofiler webserver changed, because one of the changes is a missing MIRNA file, and the website had an announcement that it was removed due to updates. There...