create_cisTarget_databases
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aertslab
Create cisTarget databases
Hello, I am working on Gene Regulatory analysis using SCENIC as it has an option to make custom database. Since you and your other colleagues have made the software, I...
> @mtxellrb A script for creating a track database from bigWig TF ChIP-seq data is now added :`create_cistarget_track_databases.py` > > https://github.com/aertslab/create_cisTarget_databases#create_cistarget_track_databasespy Hello , I am running into an issue using...
Hello, I believe there was a bug introduced in recent updates. When I use a version of this repository that I downloaded January 2nd to create custom cistarget databases, I...
Describe the bug Hi, I try to create a custom cistarget motif database according to the tutorial: https://scenicplus.readthedocs.io/en/latest/human_cerebellum_ctx_db.html However, when I ran the create_cistarget_motif_databases I get an error that the...
Hello, I am trying to use the create_cistarget_motif_databases.py script to build a database for _Arabidopsis thaliana_, but I am consistently getting an Error: No motifs provided. even on a minimal...
Hi, I'm very new to this. So apologies if I say/do something incorrectly. From my understanding, in order to run SCENIC analysis on my non-model insect species (a butterfly), I...
Hi, I ran _create_cistarget_motif_databases_ using the available motif collections (https://resources.aertslab.org/cistarget/motif_collections/v10nr_clust_public/singletons/) to obtain a feather file adapted for mm39. Then I compared to the _motifs_ column in the scores.feather file (https://resources.aertslab.org/cistarget/databases/mus_musculus/mm10/refseq_r80/mc_v10_clust/gene_based/mm10_10kbp_up_10kbp_down_full_tx_v10_clust.genes_vs_motifs.scores.feather)....
Hey there! I had originally used pyscenic for C. elegans data using my single cell RNA seq data. However, I want to incorporate my lab's ChIP-Seq data that hasn't been...
