deep-learning-genomics-primer
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abidlabs
Contains files for the deep learning in genomics primer.
If one sequence has e.g. only CGT the old code will inconsistently assign integers to each letter if other sequences have a different set of letters (i.e. ACG or ACGT)....
The OneHotEncoder object can be created using n_value or categories as parameters. But the use of n_values was deprecated and will be removed in version 0.22. Using n_value is more...
Could you explain how the DNA sequences were created. So far I know, that the ones labeled as binding (1) have the motif CGACCGAACTCC and the ones labeled as not...
Hello, Thank you for sharing the primer. Everything works except the last code block. ``` sequence_index = 1999 # You can change this to compute the gradient for a different...
