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Published 20 hours ago • verified publisher icon a-r-j

Add cpdb support to speed up parsing

Open a-r-j opened this issue 2 years ago • 5 comments
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What does this implement/fix? Explain your changes

Uses cpdb to parse PDB files for improved performance

What testing did you do to verify the changes in this PR?

Pull Request Checklist

  • [ ] Added a note about the modification or contribution to the ./CHANGELOG.md file (if applicable)
  • [ ] Added appropriate unit test functions in the ./graphein/tests/* directories (if applicable)
  • [ ] Modify documentation in the corresponding Jupyter Notebook under ./notebooks/ (if applicable)
  • [ ] Ran python -m py.test tests/ and make sure that all unit tests pass (for small modifications, it might be sufficient to only run the specific test file, e.g., python -m py.test tests/protein/test_graphs.py)
  • [ ] Checked for style issues by running black . and isort .

a-r-j avatar Jun 26 '23 15:06 a-r-j

SonarCloud Quality Gate failed.    Quality Gate failed

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 0 Code Smells

No Coverage information No Coverage information
64.1% 64.1% Duplication

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sonarqubecloud[bot] avatar Jul 06 '23 03:07 sonarqubecloud[bot]

SonarCloud Quality Gate failed.    Quality Gate failed

Bug E 1 Bug
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 0 Code Smells

No Coverage information No Coverage information
28.0% 28.0% Duplication

idea Catch issues before they fail your Quality Gate with our IDE extension sonarlint SonarLint

sonarqubecloud[bot] avatar Aug 31 '23 22:08 sonarqubecloud[bot]

SonarCloud Quality Gate failed.    Quality Gate failed

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 1 Code Smell

No Coverage information No Coverage information
25.5% 25.5% Duplication

idea Catch issues before they fail your Quality Gate with our IDE extension sonarlint SonarLint

sonarqubecloud[bot] avatar Oct 28 '23 17:10 sonarqubecloud[bot]

SonarCloud Quality Gate failed.    Quality Gate failed

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 0 Code Smells

No Coverage information No Coverage information
21.5% 21.5% Duplication

idea Catch issues before they fail your Quality Gate with our IDE extension sonarlint SonarLint

sonarqubecloud[bot] avatar Oct 28 '23 18:10 sonarqubecloud[bot]

Quality Gate Failed Quality Gate failed

Failed conditions

1 Security Hotspot
13.7% Duplication on New Code (required ≤ 5%)

See analysis details on SonarCloud

sonarqubecloud[bot] avatar Feb 07 '24 17:02 sonarqubecloud[bot]

Quality Gate Passed Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarCloud

sonarqubecloud[bot] avatar Aug 03 '24 17:08 sonarqubecloud[bot]