annotate genes using faa fasta files

[avera1988]

Hi,

I would like to use DRAM to annotate some protein predicted form various genomes, I know that in dram there is a flag annotate_genes in the pipeline. However, when I tried to use this as follow:

DRAM.py annotate_genes \
--use_uniref \
-i 52SAGSDRAM/Dasytricha.ruminantium.SAG2.pep.faa \
--threads 64 \
-o DRAM.SAGs.out

I got the following error:

Traceback (most recent call last):
  File "/glittertind/shared_conda_environments/DRAM/bin/DRAM.py", line 211, in <module>
    args.func(**args_dict)
TypeError: annotate_called_genes_cmd() got an unexpected keyword argument 'config_loc'

Looking in the help:

 --config_loc CONFIG_LOC                                                                                                                                                                                           location of an alternive config file that will over write the original at run time, but not be saved or modified (default: None)

But what is this config_loc file or how I can generate it?

I hope you can help us.

Best!

Arturo.