DRAM_setup.py error

[TonyMane]

greetings, having some trouble setting up the databases required for DRAM. Trying this through an SGE submission queue. I've attached my submission (DRAM_setup.sh) and the output log (DRAM_setup.log). Any assistance would be valuable. DRAM_setup.sh.gz DRAM_setup.log.gz

[rmFlynn]

You will want to increase your memory, as mmseqs has likely been killed by your memory management system, As in this issue. Heed this warning from the README.

"NOTE: Setting up DRAM can take a long time (up to 5 hours) and uses a large about of memory (512 gb) by default. To use less memory you can use the --skip_uniref flag which will reduce memory usage to ~64 gb if you do not provide KEGG Genes and 128 gb if you do. Depending on the number of processors which you tell it to use (using the --threads argument) and the speed of your internet connection. On a less than 5 year old server with 10 processors, it takes about 2 hours to process the data when databases do not need to be downloaded."

[rmFlynn]

Memory remains the biggest stumbling block to dram, but I will not be able to fix this today.