François Bérenger
François Bérenger
From the code ([torchani/data/__init__.py](https://github.com/aiqm/torchani/blob/40cf334dbdf71903f30be8560784ca793b830221/torchani/data/__init__.py#L157)), I suspect this: CHNOSFCl
From the paper, also CHNOSFCl.
Thanks, I was right then. This is a key thing; it should be clearly stated in the documentation too.
In bash shell: ```bash function gpu-watch () { watch nvidia-smi -a --display=utilization } ```
Here is some code that I have used in production: https://github.com/UnixJunkie/durandal_qcp/blob/master/src/qcprot.cc look for rmsd_without_rotation_matrix. I think that's what most people want. When you want to superpose molecules, that's another business.
related to https://github.com/cbouy/mols2grid/issues/53
I confirm that the env. var OMP_NUM_THREADS=1 is being royally ignored
Accelerating training is the goal. OMP_NUM_THREADS is a very simple way to limit the number of cores when running jobs in a cluster.
Would that work: load one shard of your dataset at a time (let's say 50k molecules), predict only on one shard at a time.
Do you have other such molecular pairs?