Steven Wingett

Hi, Thanks for that! Actually, the second link appeared not work. Just to double-check, the second link should be: https://github.com/lldelisle/HiCUP/tree/solve98v2 Is that correct? Thanks, Steven

Hi again, Sorry for not responding sooner, but I've been working on other projects. [lldelisle](https://github.com/lldelisle) I like fix v1 the best: https://github.com/lldelisle/HiCUP/tree/solve98_v1 Thanks very much for helping with the HiCUP...

Hi Alex, That is a huge amount of memory and I'm surprised it isn't working. I don't remember FastQ Screen making core.#### files either. Perhaps they are generated by Bowtie2...

Hi Alex, It's hard for me to assess what is causing this. FastQ Screen silently tags every read as part of normal processing, so I'm not sure why this is...

Hi, Thanks for you message. So far as I am aware, NGS sequencers actually sequence DNA or cDNA (e.g. in RNA-seq experiments). Consequently, FASTQ files will contain A, C, T,...

Hi, Thanks for bringing this to my attention. I'll raise an issue for me to look into. Best, Steven

Hi, Thank you for your suggestion and I believe it is a good idea. At the moment I'm unlikely to be able to spare time to work on this, but...

Fair point, I'll redirect the output to a log file.

Updated in commit: ce79a28ca9cd817d86677c04926bf7f0df5f016d

Hi, I'll definitely review it shortly - your contribution is very much appreciated! We are just finishing off a paper and then I'll sort this out (along with some other...