DeepAffinity

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DeepAffinity ID and Public ID Mapping Table

4

Thanks for your great packages. I want to get mapping table (DeepAffinity ID to public ID) for Protein and Drug each. (For interpreting DeepAffinity output.) e.g. For Protein (Map to...

hyojin0912

Generating the protein SPS representation

12

Hi, I am trying to run DeepAffinity on the PDBind dataset, and am running into issues when trying to use the SSpro/ACCpro to get the the secondary structure and exposedness...

psuriana

Hi, What does model numbers mean for the output of the DeepAffinity? (e.g. Model_7414, Model_20432, Model_399544, Model_1452500) Thanks in advance!!

SiYeon-Ju

Why should the number of SAP representation protein sequence file lines and the number of Canonical compound SMILE file lines match?

2

Hi, I am trying to get results of my own data with your model. (1) According to the file "DeepAffinity_inference.sh", it seems that the number of lines for input protein...

CallMeDek

Hi, I appreciate your nice work provides us with insights of SPS. I read the README pdf file for running your model on my own datasets, but I couldn't find...

DBpackage

Hello, Is DeepAffinity Mac compatible? Asking because I'm following the installation using the conda environment.yml and these packages are not found: - libstdcxx-ng - libgcc-ng Many thanks

GattiMh

# Patching CVE-2007-4559 Hi, we are security researchers from the Advanced Research Center at [Trellix](https://www.trellix.com). We have began a campaign to patch a widespread bug named CVE-2007-4559. CVE-2007-4559 is a...

TrellixVulnTeam

Typrerror when running joint-Model_test.py

1

I'm trying to use deep affinity with pretained error, but the error appeared : Tokenizing data in ./data/test_sps Tokenizing data in ./data/test_smile File "/home/recher/anaconda3/envs/deep_affinity/lib/python3.6/site-packages/tensorflow/python/framework/op_def_library.py", line 491, in apply_op preferred_dtype=default_dtype) File...

HeJunhong1107