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ABM test Paper features to main

Open DavidKerkmann opened this issue 9 months ago • 0 comments

Feature description

While working on the paper simulations in https://github.com/SciCompMod/memilio/tree/abm_paper_test_bs, many features and improvements have been added. Some features should be revisited and transferred in a tidy manner to the main branch. The main features are (discussable):

Probably will do:

  • new ABM loggers
  • introduction of viral shed factor
  • some refactoring in infection logic (either eventual heavy simplification)
  • dampings to agents' movement
  • varying parameters, e.g. change of infection rate or contact rates time-dependent per location
  • initialization of infected persons randomly in time interval of respective infection state
  • optimization of interaction only @ lcoations with infected persons
  • logic of testing in run scheme
  • normalization of exposure rate
  • Delete Simulation folder and add test simulation to the other repository

Probably we'll not do in this round:

  • make save_results more robust to work with results that don't have the exact form that it has now, e.g., aggregated by age, aggregated by location type
  • ensemble runs with MPI
  • initialization of infected, vaccinated and deceased persons from RKI/publicly availbable data

Additional context

No response

Checklist

  • [x] Attached labels, especially loc:: or model:: labels.
  • [x] Linked to project.

DavidKerkmann avatar Feb 25 '25 16:02 DavidKerkmann