Richard Chen

As mentioned in the [README](https://github.com/mahmoodlab/PathomicFusion/tree/master/data/TCGA_GBMLGG), the `all_st_cpc` and `all_st_patches_512_cpc` are the same folders which you should copy-paste. I will clarify this further in the README, so that it will reflect...

Hi @genhao3, To help you debug, in your implementation, what is the AMIL benchmark for survival analysis for TCGA-BRCA? What kind of extracted patch embeddings did you use? Attached below...

Hi @shubhaminnani - At the time of this publication, one of the earliest versions of ```torch-geometric``` was used. Your ```torch-scatter```, ```torch-sparse```, and other packages are of the latest update and...

Hi @AlanOC91 - chiming in to say that this would be a great feature. Your Pack Simulator is very useful for doing custom drafts in DuelingNexus. Having the ability to...

Hi @Luxiaowen45 - censorship=1 means the event was **not observed.** Regarding high validation c-Index, let me know if my above explanation makes sense: > Regarding the validation loss function being...

Hi @ljhOfGithub @Raymvp - after some careful debugging, [could you try removing this line in the validation and summary script](https://github.com/mahmoodlab/Patch-GCN/blob/00207f03e541f1b26ef2bf6103502b30d9422700/utils/core_utils.py#L333), to see if the results changed? https://github.com/mahmoodlab/Patch-GCN/blob/00207f03e541f1b26ef2bf6103502b30d9422700/utils/core_utils.py#L333 Before I released...

Hi @antalaszek @rafaliazz - to update, in our most recent work [TANGLE](https://github.com/mahmoodlab/TANGLE), we make available an SSL-based ABMIL pretrained with UNI features. Hope you enjoy!

Hi @GeorgeBatch - are you still running into this issue? It may be due to the repo being renamed (should be stable now).

Hi @lingxitong @LiuJin629 @zhuqh19 - I am closing this thread as I believe all users who have requested the model and successfully filled out the application should have been approved...

Hi @anhtienng - closing this thread due to inactivity, but I will comment that the base CLAM configuration (```tcga.csv```) should be sufficient in processing HunCRC slides. Let me know if...