Transitory Edge Analysis

[mjohnson541]

Adds transitory edge analysis species selection algorithm to RMG. RMS dual PR with https://github.com/ReactionMechanismGenerator/ReactionMechanismSimulator.jl/pull/196.

[lgtm-com[bot]]

This pull request introduces 3 alerts when merging 3038f7973405aa4c123fa12f47825b7c132c510c into 2a35d62dc547ee21867bb9db2d10055a540cfe70 - view on LGTM.com

new alerts:

• 2 for Unreachable code
• 1 for Unused local variable

[codecov[bot]]

Codecov Report

Merging #2317 (6f1be0c) into main (2cdc2ea) will decrease coverage by 0.13%. The diff coverage is 7.60%.

@@            Coverage Diff             @@
##             main    #2317      +/-   ##
==========================================
- Coverage   48.38%   48.25%   -0.13%     
==========================================
  Files         110      110              
  Lines       30517    30605      +88     
  Branches     7951     7981      +30     
==========================================
+ Hits        14765    14769       +4     
- Misses      14211    14291      +80     
- Partials     1541     1545       +4     

Impacted Files	Coverage Δ
rmgpy/rmg/input.py	27.27% <2.63%> (-2.01%)	:arrow_down:
rmgpy/rmg/reactors.py	19.95% <21.42%> (+0.20%)	:arrow_up:
rmgpy/rmg/settings.py	82.97% <100.00%> (+0.75%)	:arrow_up:
arkane/encorr/decomp.py	93.50% <0.00%> (-5.20%)	:arrow_down:
arkane/kinetics.py	12.24% <0.00%> (ø)
arkane/encorr/data.py	93.48% <0.00%> (+0.93%)	:arrow_up:

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[lgtm-com[bot]]

This pull request introduces 3 alerts when merging 3caf7807760cf6713d4d32772d9fad8798389436 into b2c917fd775c10e43bcb55805c9652ce05044532 - view on LGTM.com

new alerts:

• 2 for Unreachable code
• 1 for Unused local variable

[lgtm-com[bot]]

This pull request introduces 3 alerts when merging cb0c64a359921f492cab62c97594f7bd431a6e6f into b2c917fd775c10e43bcb55805c9652ce05044532 - view on LGTM.com

new alerts:

• 2 for Unreachable code
• 1 for Unused local variable

[mjohnson541]

@hwpang https://github.com/ReactionMechanismGenerator/ReactionMechanismSimulator.jl/pull/196 is merged now. I think we're ready here, can you approve?