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convert to zero-based coords

Open bw2 opened this issue 6 years ago • 4 comments

bw2 avatar Feb 25 '19 02:02 bw2

Codecov Report

Merging #57 into master will not change coverage. The diff coverage is n/a.

Impacted file tree graph

@@           Coverage Diff           @@
##           master      #57   +/-   ##
=======================================
  Coverage   90.29%   90.29%           
=======================================
  Files           4        4           
  Lines         371      371           
=======================================
  Hits          335      335           
  Misses         36       36

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codecov-io avatar Feb 25 '19 02:02 codecov-io

this isn't well documented, but I'm pretty sure TRF .dat files have 1-based start coords.

bw2 avatar Feb 25 '19 06:02 bw2

Thanks! Ah the joys of bioinformatics formats. I'll have to check my reference data too.

hdashnow avatar Feb 25 '19 06:02 hdashnow

and I'm just basing this on the dat files being off-by-one in IGV. I never did find docs for this.

bw2 avatar Mar 01 '19 06:03 bw2