fastp icon indicating copy to clipboard operation
fastp copied to clipboard

Published 20 hours ago • verified publisher icon OpenGene

Multiple input

Open mossishahi opened this issue 7 years ago • 5 comments

Whats the solution if we have multiple paired fastq files which we want to run fastp on them. suppose 120 files named like (s_1_1_qseq.fq to s_1_120_qseq.fq) and their pairs are (s_2_1_qseq.fq to s_2_120_qseq.fq). how is it possible to do that at once?

mossishahi avatar May 29 '18 00:05 mossishahi

You can use some script languages, like shell or python to make a loop, and run fastp one by one.

sfchen avatar May 29 '18 00:05 sfchen

can you suggest an example ? it will be useful for non-programmers like me

deepbiomed9 avatar Jun 12 '18 17:06 deepbiomed9

It would be grealy appreciated it you could! Thanks for this awesome tool!

josemseoane avatar Sep 13 '18 12:09 josemseoane

Did we ever get this presented?

ChristopherLeach123 avatar Jun 09 '22 18:06 ChristopherLeach123