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Published 20 hours ago • verified publisher icon OpenGene

fastp:UMI

Open fanyucai1 opened this issue 6 years ago • 1 comments

I use fastp to process UMI per_read, as follows: @A00153:435:HNGTVDSXX:1:1101:3712:1000:GCTGTCA_GTCCTCT 1:N:0:GAATTCGT+TTATGAGT

But I use Illumina bcl2fastq to process UMI ,as follows: @A00153:435:HNGTVDSXX:1:1101:3712:1000:GCTGTCA+GTCCTCT 1:N:0:GAATTCGT+TTATGAGT

fastp could offer a parameter to chose the “+” 、“_” or others.

fanyucai1 avatar Aug 28 '19 08:08 fanyucai1

Hi, did you mean

@A00153:435:HNGTVDSXX:1:1101:3712:1000:GCTGTCA+GTCCTCT 1:N:0:GAATTCGT+TTATGAGT

was created by bcl2fastq?

sfchen avatar Oct 23 '21 00:10 sfchen