Deprecate guess_bonds and bond guessing kwargs in Universe

[lilyminium]

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Fixes #4756

Changes made in this Pull Request:

• Adds deprecation warning to bond keywords

PR Checklist

• [x] Tests?
• [ ] Docs?
• [x] CHANGELOG updated?
• [x] Issue raised/referenced?

Developers certificate of origin

• [x] I certify that this contribution is covered by the LGPLv2.1+ license as defined in our LICENSE and adheres to the Developer Certificate of Origin.

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📚 Documentation preview 📚: https://mdanalysis--4757.org.readthedocs.build/en/4757/