Bond guessing double specified in Universe.__init__

[lilyminium]

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Expected behavior

Bond guessing is turned on in two ways in Universe creation: to_guess("bonds") or guess_bonds=True. The latter should probably be deprecated , as well as the other kwargs related to bond guessing (fudge_factor and friends).

Current version of MDAnalysis

• Which version are you using? (run python -c "import MDAnalysis as mda; print(mda.__version__)")
• Which version of Python (python -V)?
• Which operating system?