LinuxPersonEC
LinuxPersonEC
> The complexity of getting all of this right is the reason `coinbrew` exists and I think you would save yourself a lot of trouble by letting it do the...
I tried this on our RHEL 7 cluster where the latest blas available is `blas-3.4.2-8.el7.x86_64` or as a module `blas/gcc/64/3.8.0` but I see this: ``` ################################################# ### Building ThirdParty/Blas 1.4.8...
> Even I faced the same issue. I was able to overcome it by installing the openblas using candi. Hope it works for you too. Indeed in candi.cfg I put:...
> @MichaelHiller @lynnyummy @SomePersonSomeWhereInTheWorld @guo-cheng The `Chain results file /nfs/users//TOGA/micro_test_out/temp/chain_results_df.tsv is empty! Abort.` message is misleading -> in fact, nextflow does not even start the jobs. However, it does not...
Here is the top part of the `.nextflow.log`. Is there another option I need to use? ``` Apr-30 12:32:43.670 [main] DEBUG nextflow.cli.Launcher - $> nextflow /path/to/me/make_lastz_chains/parallelization/execute_joblist.nf --joblist /path/to/me/make_lastz_chains/test_out_1/temp_lastz_run/lastz_joblist.txt -c /path/to/me/make_lastz_chains/test_out_1/temp_lastz_run/lastz_config.nf...
@MichaelHiller am I understanding the [documentation](https://github.com/hillerlab/make_lastz_chains?tab=readme-ov-file) correctly? > To run the pipeline on a Slurm cluster, for instance, add the `--executor slurm `option. Refer to the [Nextflow documentation](https://www.nextflow.io/docs/latest/executor.html) for a...
> That being said, it seems a bit anti-social to segv instead of printing a helpful error message in these cases. ☹️ Here's what it looks like running` mpirun --mca...
Also when running `mpirun --mca pml ucx --mca btl '^openib' `on the [OSU Multi-threaded Latency Test](http://mvapich.cse.ohio-state.edu/benchmarks/) why can't ucx be selected? ``` [xxx:105832] PML ucx cannot be selected -------------------------------------------------------------------------- No...
> UCX built with multithreaded support? Ah good question was done before my time. Is there a way to use `-x UCX_LOG_LEVEL=data `to find out?
``` mpirun -mca pml_ucx_verbose 999 -np 6 --host xxx,xxx,xxx,xxx --oversubscribe --mca orte_base_help_aggregate 0 --mca opal_warn_on_missing_libcuda 0 ./stream_mpi -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: xxx...