Ismail Moghul

Results 37 comments of Ismail Moghul

So, are you referring to use via the web app? If so, this is an expected bug - as we do not have a queueing system in place. Therefore, the...

We would need a queueing system. e.g. this could be as simple as having an array stored in memory (or storing the input query in a file and keeping the...

Yep, good idea. We are using the same pool.rb code for the GeneValidator threads queue. We should be able to use the same queueing system for the app as well....

Hi @JochenSchaefergmxde, Apologies for this. I have identified the underlying issue and will try and release a fix over this coming week.

As a quick solution, the following should work: ```bash genevalidator -b " -taxidlist 47466_taxid.txt" -d /mnt/nvme0n1p5/blast_db/nr -s -n 32 --force -o ./47466_Borrelia_miyamotoi_nr_gv --output_formats "all" -m 32 47466_Borrelia_miyamotoi.fna ``` Specifically, add...

We now have `--min_blast_hits_required` to allow users to choose min (default is still 5). What do you think is a fix for this - Shall we move the hits column...

@agarie Many Thanks, Most Appreciated.