Trans-Omics-Acceleration-Library icon indicating copy to clipboard operation
Trans-Omics-Acceleration-Library copied to clipboard

cannot open source file "bwa.h"

Open HenryYihengXu opened this issue 3 years ago • 0 comments

Hello, I'm trying to compile LISA with the provided make file. It gives me cannot open source file "bwa.h" when I run make. Specifically, here is the error message:

icpc  -DSAIS=1 -std=c++17 -xCORE-AVX512 -Ofast -fopenmp -Wall -Wshadow -Wno-char-subscripts -DOUTPUT -DNO_HUGE_PAGE -DNO_DNA_ORD -DREV_COMP -DBWA_MEM_BUG -DNOCHUNK -DVECTORIZE  -DENABLE_PREFETCH -D_64BIT -I src/ -I ../ext/ -I ../ext/safestringlib/include/ benchmarks/bench-smem-lisa.cpp -lz -L./.. -ltal -L ../ext/safestringlib/ -lsafestring  -DPRINT_OUTPUT -o smem-lisa.o
In file included from src/qbwt-rmi-batched.h(31),
                 from benchmarks/bench-smem-lisa.cpp(26):
src/read.h(30): catastrophic error: cannot open source file "bwa.h"
  #include "bwa.h"
                  ^

compilation aborted for benchmarks/bench-smem-lisa.cpp (code 4)
make: *** [smem-lisa] Error 4

I didn't see bwa.h in the repo. Could you help me fix this issue? Thanks

HenryYihengXu avatar Apr 28 '22 19:04 HenryYihengXu