[Feature Request]: .gitignore update

[HenkDz]

Do you need to file a feature request?

• [x] I have searched the existing feature request and this feature request is not already filed.
• [x] I believe this is a legitimate feature request, not just a question or bug.

Feature Request Description

I think .gitignore should have these extra lines: /deepcode_lab/papers mcp_agent.secrets.yaml /logs

Additional Context

No response