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Use pretrained ESM-GearNet model to acquire sequence embeddings, like ESM

Open deardeer7 opened this issue 1 year ago • 4 comments

Great work! I am attemptting to use your pretrained ESM-GearNet model to acquire sequence embeddings, similar to the ones from ESM. How can I achieve this?

deardeer7 avatar Mar 06 '24 07:03 deardeer7

Great work! I am attemptting to use your pretrained ESM-GearNet model to acquire sequence embeddings, similar to the ones from ESM. How can I achieve this?

Great work! I am attemptting to use your pretrained ESM-GearNet model to acquire sequence embeddings, similar to the ones from ESM. How can I achieve this?

I want to extract sequence embeddings by using this model . Have you achieved yet?

ShallowDream0218 avatar Mar 19 '24 13:03 ShallowDream0218

Same question. It seems that the authors of this work only gave the commands for training from scratch but didn't release the pretrained model. So how can we obtain sequence embeddings from the model without training by ourselves? Seeks for help.

Yangqy-16 avatar Mar 20 '24 07:03 Yangqy-16

Same question. It seems that the authors of this work only gave the commands for training from scratch but didn't release the pretrained model. So how can we obtain sequence embeddings from the model without training by ourselves? Seeks for help.

What's the result of training from scratch? Isn't it sequence embeddings?

ShallowDream0218 avatar Mar 20 '24 16:03 ShallowDream0218

Same question. It seems that the authors of this work only gave the commands for training from scratch but didn't release the pretrained model. So how can we obtain sequence embeddings from the model without training by ourselves? Seeks for help.

What's the result of training from scratch? Isn't it sequence embeddings?

Sorry, I don't have the resource (4 A100 GPUs as mentioned in the article) to train from scratch so I don't know the result.

Yangqy-16 avatar Mar 21 '24 06:03 Yangqy-16