blobtools
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DRL
Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
I installed blobtools with conda. Everything worked fine up until blobtools plot, at which stage I got no output and no error. Instead regardless of the command formation I just...
Hello, This is mostly a PSA, as the following took me way to long to work out myself. Perhaps the authors could add this to the docs somewhere appropriate. To...
I produced a covplot for my data and it shows 51.57% unmapped reads. This number does not match the mapped reads info from my .cov or .json. Are these supposed...
Hello Can you please add an option to the nodesdb tools to redirect the output nodesDB.txt in an another place ? It's for continue to use the tools even if...
Following the Conda environment installation instructions on the readme, I hit the following error after running `conda install -c bioconda pysam --update-deps`: ``` Collecting package metadata (current_repodata.json): done Solving environment:...
Hi! I am using blobtools 1.1.1 installed with miniconda. I followed the instructions to install the nodesdb and no file is generated using blobtools nodesdb. Any idea what I am...
Hey All I am trying to install the github version of blobtools and running into the following error. Please find the code to reproduce the error. `module load python/3.7.3` `module...
Hi, In the documentation it [lists options for bamfilter ](https://blobtools.readme.io/docs/bamfilter#section-comments) that don't seem to exist in the version I downloaded and installed using the instructions (Option A: Conda). These include...
Hi, I have been using blobtools to plot the diversity of symbiotic bacteria found in a plant. Everything seems to work great, the .bam file shows about 98% mapped reads...
fallback to use ParsedRequirement.requirement if the setup.py fails with an attribute error. tested with: * python 2.7.15 * python 3.6.3 * python 3.8.5 how to replicate: ``` git clone https://github.com/DRL/blobtools...
