MedCATtutorials
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CogStack
General tutorials for the setup and use of MedCAT.
"The macos-11 label has been deprecated and will no longer be available after 6/28/2024" so be this PR.
Following commands from the MedCAT tutorial on my recently updated Arch Linux, I started by pip-installing `medcat==1.8.0`: ``` TMPDIR=$(realpath tmp) pip install medcat==1.8.0 ``` and it failed while installing the...
Add (at least temporarily) the stuff removed in MedCAT PR: https://github.com/CogStack/MedCAT/pull/356 The workflow is likely to fail due to the fact that `py2neo` seems to have ceased to exist. Will...
Updates to Tutorials 4.1 and 4.2: Integration of BERT Implementation - Tutorial 4.1: No changes were necessary since BERT utilizes its own pre-trained tokenizer. A note has been added advising...
This is an amazing module. Thanks for all your hard work. I was working through the notebook [notebooks/introductory/Part_3_2_Extracting_Diseases_from_Electronic_Health_Records.ipynb](https://github.com/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_3_2_Extracting_Diseases_from_Electronic_Health_Records.ipynb), and I have a couple of questions: 1. Why do we need...
This is the first version of these tutorials. I'm pretty sure we will need more complex ones if we aim to demo the full pipeline in one go. Missing from...
