compilation error

[Kim1230]

I install neuron with coreneuron with GPU. And the configuration is below: cmake: 3.16.8 nvhpc: 22.3/ cuda: 11.6 python: 3.8

But when I operate: nrnivmodl -coreneuron mod for the test: S1_netpyne-coreneuron. I got a problem: Mod files: "mod/mod/ar_traub.mod" "mod/mod/cadad.mod" "mod/mod/CaDynamics_E2.mod" "mod/mod/cadyn.mod" "mod/mod/cagk.mod" "mod/mod/Ca_HVA.mod" "mod/mod/cal_mh.mod" "mod/mod/cal_mig.mod" "mod/mod/Ca_LVAst.mod" "mod/mod/Ca.mod" "mod/mod/cancr.mod" "mod/mod/canin.mod" "mod/mod/can_mig.mod" "mod/mod/catcb.mod" "mod/mod/cat_mig.mod" "mod/mod/cat_traub.mod" "mod/mod/ch_CavL.mod" "mod/mod/ch_CavN.mod" "mod/mod/ch_KCaS.mod" "mod/mod/ch_Kdrfastngf.mod" "mod/mod/ch_KvAngf.mod" "mod/mod/ch_KvCaB.mod" "mod/mod/ch_leak.mod" "mod/mod/ch_Navngf.mod" "mod/mod/DetAMPANMDA.mod" "mod/mod/DetGABAAB.mod" "mod/mod/gabab.mod" "mod/mod/h_BS.mod" "mod/mod/HCN1.mod" "mod/mod/HH2.mod" "mod/mod/h_harnett.mod" "mod/mod/hin.mod" "mod/mod/h_kole.mod" "mod/mod/h_migliore.mod" "mod/mod/htc.mod" "mod/mod/ican_sidi.mod" "mod/mod/iccr.mod" "mod/mod/IC.mod" "mod/mod/iconc_Ca.mod" "mod/mod/Ih.mod" "mod/mod/ikscr.mod" "mod/mod/IKsin.mod" "mod/mod/Im.mod" "mod/mod/IT2.mod" "mod/mod/IT.mod" "mod/mod/kap_BS.mod" "mod/mod/kapcb.mod" "mod/mod/kapin.mod" "mod/mod/kBK.mod" "mod/mod/kca.mod" "mod/mod/kctin.mod" "mod/mod/kdmc_BS.mod" "mod/mod/kdr_BS.mod" "mod/mod/kdrcr.mod" "mod/mod/kdrin.mod" "mod/mod/KdShu2007.mod" "mod/mod/kl.mod" "mod/mod/km.mod" "mod/mod/K_Pst.mod" "mod/mod/K_Tst.mod" "mod/mod/kv.mod" "mod/mod/MyExp2SynBB.mod" "mod/mod/my_exp2syn.mod" "mod/mod/MyExp2SynNMDABB.mod" "mod/mod/nafcr.mod" "mod/mod/nafx.mod" "mod/mod/Nap_Et2.mod" "mod/mod/nap_sidi.mod" "mod/mod/NaTa_t.mod" "mod/mod/NaTs2_t.mod" "mod/mod/nax_BS.mod" "mod/mod/naz.mod" "mod/mod/Nca.mod" "mod/mod/ProbAMPANMDA_EMS.mod" "mod/mod/ProbGABAAB_EMS.mod" "mod/mod/savedist.mod" "mod/mod/SK_E2.mod" "mod/mod/SKv3_1.mod" "mod/mod/StochKv_deterministic.mod" "mod/mod/StochKv.mod" "mod/mod/tia.mod" "mod/mod/vecstim.mod"

[INFO] Running: make -j4 -f /home/test/install/share/coreneuron/nrnivmodl_core_makefile ROOT=/home/yjy/test/install MODS_PATH=x86_64/corenrn/mod2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0 Default NMODL flags: NVC++-W-1057-Static variables are not supported in acc routine - _ZZN54_INTERNAL_32_x86_64_corenrn_mod2c_StochKv_cpp_b3aebc776gammlnEdE3cof (x86_64/corenrn/mod2c/StochKv.cpp: 814) NVC++-W-1057-Static variables are not supported in acc routine - _ZN54_INTERNAL_32_x86_64_corenrn_mod2c_StochKv_cpp_b3aebc7710coreneuron12_tmin_tratesE (x86_64/corenrn/mod2c/StochKv.cpp: 524) NVC++-S-1058-Call to variadic function not supported - fprintf (x86_64/corenrn/mod2c/StochKv.cpp: 618) NVC++/x86-64 Linux 22.3-0: compilation completed with severe errors NVC++-W-1057-Static variables are not supported in acc routine - _ZN52_INTERNAL_30_x86_64_corenrn_mod2c_cadad_cpp_f440821310coreneuron7FARADAYE (x86_64/corenrn/mod2c/cadad.cpp: 291) make: *** [/home/test/install/share/coreneuron/nrnivmodl_core_makefile:243: x86_64/corenrn/build/StochKv.o] Error 2 make: *** Waiting for unfinished jobs.... NVC++/x86-64 Linux 22.3-0: compilation completed with warnings

And the related code was: $(CXX_COMPILE_CMD) -c $< -o $@ -DNRN_PRCELLSTATE=$(NRN_PRCELLSTATE) --diag_suppress=111,550 --diag_suppress=161,177

I don't know why it happens and how it can be fixed. Thanks!

[pramodk]

@Kim1230: Is S1_netpyne-coreneuron mod files available somewhere on GitHub? (Is it from https://github.com/suny-downstate-medical-center/S1_netpyne or some other derived version?)

[Kim1230]

@Kim1230: Is S1_netpyne-coreneuron mod files available somewhere on GitHub? (Is it from https://github.com/suny-downstate-medical-center/S1_netpyne or some other derived version?)

The S1_netpyne-coreneuron mod files are available from https://github.com/suny-downstate-medical-center/S1_netpyne/tree/coreneuron.

[pramodk]

@iomaganaris : maybe you could provide response here?

[iomaganaris]

Some of the mod files' fixes for GPU execution and NEURON 8.2.0+ were missing from the mod file directory of this branch. I opened a PR to update them in https://github.com/suny-downstate-medical-center/S1_netpyne/pull/4

[iomaganaris]

Hello @Kim1230 ,

do you have any update on the status of your simulation? Did you manage to run it with CoreNEURON on GPU? I saw in the S1_netpyne repo that you mentioned some additional issues when executing on the GPUs. Did you manage to fix them somehow? Let us know if you face any issue and we can help you