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Published 20 hours ago • verified publisher icon BioinformaticsFMRP

Cannot select IDAT folder

Open askw23 opened this issue 7 years ago • 2 comments

Hi,

I cannot select an IDAT folder (see attached image); it's just blank and no options to choose from. Same thing with "set working directory" under configuration. "Select file to download" under configuration works though and I can select summarized experiments for the DMR etc without problems but I would like to use my own data. Any thoughts or solutions to this problem? Can I create the rda file myself and select that (need to process the data?)? I'm using R v.3.5.0 and have installed TCGAbiolinks through bioconductor.

select idat folder

Thanks in advance!

askw23 avatar May 09 '18 08:05 askw23

Sorry for the delay. So, "set working directory" is black and there are no options under volume? screen shot 2018-05-15 at 9 41 02 am screen shot 2018-05-15 at 9 41 14 am

Is TCGAbiolinksGUI running on a server or a local installation? Can you send me your sessionInfo(), I'm using v.3.5.0 and it is working locally on a mac.

tiagochst avatar May 15 '18 12:05 tiagochst

Hi,

Thanks for your reply!

Correct, there are no options under volume for "set working directory" (looks the same as the image I uploaded) and not for selecting IDAT-folder either.

It is running on a server.

See attached document for the sessionInfo(). sessionInfo.txt

askw23 avatar May 15 '18 12:05 askw23