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Problem when reading tiff. Issue related with the `aicsimageio[all]` bug

Open jplumail opened this issue 2 years ago • 1 comments
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FYI this issue may cause trouble to this package.

Because it uses aicsimageio[all] https://github.com/AllenCellModeling/napari-aicsimageio/blob/main/pyproject.toml#L48

the wrong version of tifffile is installed, leading to bugs.

Description

Reading a Tiff file fails. I had to use the napari-builtins to read it.

Expected Behavior

Open a Tiff.

Reproduction

python -m napari "https://people.math.sc.edu/Burkardt/data/tif/at3_1m4_01.tif"

Environment

I have the latest version of aicsimageio.

jplumail avatar May 30 '23 15:05 jplumail

Thanks for reporting. I'm not sure how to handle this one. bfio doesn't seem to be overly actively developed—perhaps we just need to drop it for the time being. 🤔

psobolewskiPhD avatar May 30 '23 19:05 psobolewskiPhD